Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Transcription elongation factor A protein-like 8

Gene

Tceal8

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in transcriptional regulation.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription elongation factor A protein-like 8
Short name:
TCEA-like protein 8
Alternative name(s):
Transcription elongation factor S-II protein-like 8
Up-regulated in nephrectomized rat kidney #1
Gene namesi
Name:Tceal8
ORF Names:UR-NR#1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi1359631. Tceal8.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 117117Transcription elongation factor A protein-like 8PRO_0000239218Add
BLAST

Proteomic databases

PaxDbiQ6I7R5.
PRIDEiQ6I7R5.

Expressioni

Tissue specificityi

Highly expressed in kidney. Moderately expressed in heart and lung. Low expression in brain and liver. Expression is up-regulated in nephrectomized kidney.1 Publication

Gene expression databases

GenevisibleiQ6I7R5. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000053943.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili73 – 10028Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the TFS-II family. TFA subfamily.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410JBTZ. Eukaryota.
ENOG4111DNR. LUCA.
GeneTreeiENSGT00730000111091.
HOGENOMiHOG000231343.
HOVERGENiHBG098559.
InParanoidiQ6I7R5.
OMAiSCDENEG.
OrthoDBiEOG7G4QH8.
PhylomeDBiQ6I7R5.

Family and domain databases

InterProiIPR021156. TF_A-like/BEX-like.
[Graphical view]
PfamiPF04538. BEX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6I7R5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKSCDENEG TPQNTPKADE GHPSEDPPQQ AGENLQASGE NVREETDGSL
60 70 80 90 100
RGEPAEPSPE PKEDTPARHL NPEEVIRGVD ELERLREEIR RVRNKFVLMH
110
WKQRHSRSRP YPVCFRP
Length:117
Mass (Da):13,447
Last modified:July 19, 2004 - v1
Checksum:iAC9F19DE6C7CBD9F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB108667 mRNA. Translation: BAD23892.1.
BC086418 mRNA. Translation: AAH86418.1.
RefSeqiNP_001014297.1. NM_001014275.1.
UniGeneiRn.3795.

Genome annotation databases

EnsembliENSRNOT00000017138; ENSRNOP00000053943; ENSRNOG00000028585.
GeneIDi367909.
KEGGirno:367909.
UCSCiRGD:1359631. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB108667 mRNA. Translation: BAD23892.1.
BC086418 mRNA. Translation: AAH86418.1.
RefSeqiNP_001014297.1. NM_001014275.1.
UniGeneiRn.3795.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000053943.

Proteomic databases

PaxDbiQ6I7R5.
PRIDEiQ6I7R5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000017138; ENSRNOP00000053943; ENSRNOG00000028585.
GeneIDi367909.
KEGGirno:367909.
UCSCiRGD:1359631. rat.

Organism-specific databases

CTDi90843.
RGDi1359631. Tceal8.

Phylogenomic databases

eggNOGiENOG410JBTZ. Eukaryota.
ENOG4111DNR. LUCA.
GeneTreeiENSGT00730000111091.
HOGENOMiHOG000231343.
HOVERGENiHBG098559.
InParanoidiQ6I7R5.
OMAiSCDENEG.
OrthoDBiEOG7G4QH8.
PhylomeDBiQ6I7R5.

Miscellaneous databases

PROiQ6I7R5.

Gene expression databases

GenevisibleiQ6I7R5. RN.

Family and domain databases

InterProiIPR021156. TF_A-like/BEX-like.
[Graphical view]
PfamiPF04538. BEX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Gene expression variance based on random sequencing in rat remnant kidney."
    Horiba N., Masuda S., Takeuchi A., Saito H., Okuda M., Inui K.
    Kidney Int. 66:29-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
    Strain: Wistar.
    Tissue: Kidney.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Kidney.

Entry informationi

Entry nameiTCAL8_RAT
AccessioniPrimary (citable) accession number: Q6I7R5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: July 19, 2004
Last modified: June 8, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.