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Q6I5Y0

- CDKC1_ORYSJ

UniProt

Q6I5Y0 - CDKC1_ORYSJ

Protein

Cyclin-dependent kinase C-1

Gene

CDKC-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (19 Jul 2004)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + a protein = ADP + a phosphoprotein.
    ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei54 – 541ATPPROSITE-ProRule annotation
    Active sitei164 – 1641Proton acceptorPROSITE-ProRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi31 – 399ATPPROSITE-ProRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. cyclin-dependent protein serine/threonine kinase activity Source: UniProtKB-EC
    3. RNA polymerase II carboxy-terminal domain kinase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carpel development Source: EnsemblPlants/Gramene
    2. leaf development Source: EnsemblPlants/Gramene
    3. mRNA processing Source: EnsemblPlants/Gramene
    4. regulation of viral process Source: EnsemblPlants/Gramene
    5. response to virus Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Kinase, Serine/threonine-protein kinase, Transferase

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Cyclin-dependent kinase C-1 (EC:2.7.11.22, EC:2.7.11.23)
    Short name:
    CDKC;1
    Gene namesi
    Name:CDKC-1
    Ordered Locus Names:Os05g0389700, LOC_Os05g32360
    ORF Names:OJ1562_H01.5
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 5

    Organism-specific databases

    GrameneiQ6I5Y0.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosol Source: EnsemblPlants/Gramene
    2. nuclear body Source: EnsemblPlants/Gramene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 519519Cyclin-dependent kinase C-1PRO_0000296100Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei35 – 351PhosphothreonineBy similarity
    Modified residuei36 – 361PhosphotyrosineBy similarity
    Modified residuei198 – 1981PhosphothreonineBy similarity

    Keywords - PTMi

    Phosphoprotein

    Proteomic databases

    PRIDEiQ6I5Y0.

    Expressioni

    Inductioni

    By auxin. Down-regulated by cytokinin.1 Publication

    Structurei

    3D structure databases

    ProteinModelPortaliQ6I5Y0.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini25 – 325301Protein kinasePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 protein kinase domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0515.
    HOGENOMiHOG000233024.
    KOiK08819.
    OMAiHHENVIH.

    Family and domain databases

    InterProiIPR011009. Kinase-like_dom.
    IPR000719. Prot_kinase_dom.
    IPR017441. Protein_kinase_ATP_BS.
    IPR002290. Ser/Thr_dual-sp_kinase_dom.
    IPR008271. Ser/Thr_kinase_AS.
    [Graphical view]
    PfamiPF00069. Pkinase. 1 hit.
    [Graphical view]
    SMARTiSM00220. S_TKc. 1 hit.
    [Graphical view]
    SUPFAMiSSF56112. SSF56112. 1 hit.
    PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
    PS50011. PROTEIN_KINASE_DOM. 1 hit.
    PS00108. PROTEIN_KINASE_ST. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6I5Y0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAVAAPGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MARETETQEI    50
    VALKKIRMDN EREGFPITAI REIKILKKLH HQNVIQLKEI VTSPGPERDE 100
    QGKPIHGNKY KGSIYMVFEY MDHDLTGLAD RPGMRFTVPQ IKCYMKQLLT 150
    GLHYCHINQV LHRDIKGSNL LIDNEGNLKL ADFGLARSFS NDHNGNLTNR 200
    VITLWYRPPE LLLGSTKYGP AVDMWSVGCI FAELLNGKPI LPGKNEPEQL 250
    SKIFDVCGTP DESNWPGVTK MPWYNNFKPP RQLKRRVKEY FKHFDRLALD 300
    LLEKMLTLDP AQRISAQDAL DAEYFWSDPL PCDPKSLPKY ESSHEFQTKK 350
    KRQQMRQADE AAKRQKTQHP QPHGRLPPIQ QTGQPHPQIR PGQPMNNPHA 400
    PMAAGPGHHY AKPRGPGGSS RYPQGGNQGG GYPNRGGQGG GGSYGNAPYP 450
    QQGRGPPPPY PGSGMAGTGG PRGGVGGGYG GGSNYPQQGG PYGPSGPGRG 500
    SNYPQQGGSR NQQQYGNWQ 519
    Length:519
    Mass (Da):57,451
    Last modified:July 19, 2004 - v1
    Checksum:i8CF0E99557E0E05C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC105773 Genomic DNA. Translation: AAT47442.1.
    AP008211 Genomic DNA. Translation: BAF17350.1.
    AK073808 mRNA. No translation available.
    RefSeqiNP_001055436.1. NM_001061971.1.
    UniGeneiOs.4626.

    Genome annotation databases

    EnsemblPlantsiOS05T0389700-01; OS05T0389700-01; OS05G0389700.
    GeneIDi4338674.
    KEGGiosa:4338674.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC105773 Genomic DNA. Translation: AAT47442.1 .
    AP008211 Genomic DNA. Translation: BAF17350.1 .
    AK073808 mRNA. No translation available.
    RefSeqi NP_001055436.1. NM_001061971.1.
    UniGenei Os.4626.

    3D structure databases

    ProteinModelPortali Q6I5Y0.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q6I5Y0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS05T0389700-01 ; OS05T0389700-01 ; OS05G0389700 .
    GeneIDi 4338674.
    KEGGi osa:4338674.

    Organism-specific databases

    Gramenei Q6I5Y0.

    Phylogenomic databases

    eggNOGi COG0515.
    HOGENOMi HOG000233024.
    KOi K08819.
    OMAi HHENVIH.

    Family and domain databases

    InterProi IPR011009. Kinase-like_dom.
    IPR000719. Prot_kinase_dom.
    IPR017441. Protein_kinase_ATP_BS.
    IPR002290. Ser/Thr_dual-sp_kinase_dom.
    IPR008271. Ser/Thr_kinase_AS.
    [Graphical view ]
    Pfami PF00069. Pkinase. 1 hit.
    [Graphical view ]
    SMARTi SM00220. S_TKc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56112. SSF56112. 1 hit.
    PROSITEi PS00107. PROTEIN_KINASE_ATP. 1 hit.
    PS50011. PROTEIN_KINASE_DOM. 1 hit.
    PS00108. PROTEIN_KINASE_ST. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    5. "Genome-wide identification and expression analysis of rice cell cycle genes."
      Guo J., Song J., Wang F., Zhang X.S.
      Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: INDUCTION, GENE FAMILY.

    Entry informationi

    Entry nameiCDKC1_ORYSJ
    AccessioniPrimary (citable) accession number: Q6I5Y0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 24, 2007
    Last sequence update: July 19, 2004
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3