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Protein

Cyclin-dependent kinase C-1

Gene

CDKC-1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

ATP + a protein = ADP + a phosphoprotein.
ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei54ATPPROSITE-ProRule annotation1
Active sitei164Proton acceptorPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi31 – 39ATPPROSITE-ProRule annotation9

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Serine/threonine-protein kinase, Transferase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiR-OSA-674695. RNA Polymerase II Pre-transcription Events.

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclin-dependent kinase C-1 (EC:2.7.11.22, EC:2.7.11.23)
Short name:
CDKC;1
Gene namesi
Name:CDKC-1
Ordered Locus Names:Os05g0389700, LOC_Os05g32360
ORF Names:OJ1562_H01.5, OsJ_18411Imported
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 5

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002961001 – 519Cyclin-dependent kinase C-1Add BLAST519

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei35PhosphothreonineBy similarity1
Modified residuei36PhosphotyrosineBy similarity1
Modified residuei198PhosphothreonineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ6I5Y0.
PRIDEiQ6I5Y0.

Expressioni

Inductioni

By auxin. Down-regulated by cytokinin.1 Publication

Gene expression databases

GenevisibleiQ6I5Y0. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g32360.1.

Structurei

3D structure databases

ProteinModelPortaliQ6I5Y0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 325Protein kinasePROSITE-ProRule annotationAdd BLAST301

Sequence similaritiesi

Contains 1 protein kinase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0600. Eukaryota.
ENOG410XPIR. LUCA.
HOGENOMiHOG000233024.
InParanoidiQ6I5Y0.
KOiK08819.
OMAiNNPHAPI.
OrthoDBiEOG093607V4.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6I5Y0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVAAPGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MARETETQEI
60 70 80 90 100
VALKKIRMDN EREGFPITAI REIKILKKLH HQNVIQLKEI VTSPGPERDE
110 120 130 140 150
QGKPIHGNKY KGSIYMVFEY MDHDLTGLAD RPGMRFTVPQ IKCYMKQLLT
160 170 180 190 200
GLHYCHINQV LHRDIKGSNL LIDNEGNLKL ADFGLARSFS NDHNGNLTNR
210 220 230 240 250
VITLWYRPPE LLLGSTKYGP AVDMWSVGCI FAELLNGKPI LPGKNEPEQL
260 270 280 290 300
SKIFDVCGTP DESNWPGVTK MPWYNNFKPP RQLKRRVKEY FKHFDRLALD
310 320 330 340 350
LLEKMLTLDP AQRISAQDAL DAEYFWSDPL PCDPKSLPKY ESSHEFQTKK
360 370 380 390 400
KRQQMRQADE AAKRQKTQHP QPHGRLPPIQ QTGQPHPQIR PGQPMNNPHA
410 420 430 440 450
PMAAGPGHHY AKPRGPGGSS RYPQGGNQGG GYPNRGGQGG GGSYGNAPYP
460 470 480 490 500
QQGRGPPPPY PGSGMAGTGG PRGGVGGGYG GGSNYPQQGG PYGPSGPGRG
510
SNYPQQGGSR NQQQYGNWQ
Length:519
Mass (Da):57,451
Last modified:July 19, 2004 - v1
Checksum:i8CF0E99557E0E05C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC105773 Genomic DNA. Translation: AAT47442.1.
AP008211 Genomic DNA. Translation: BAF17350.1.
AP014961 Genomic DNA. Translation: BAS93836.1.
CM000142 Genomic DNA. Translation: EEE63594.1.
AK073808 mRNA. Translation: BAG93649.1.
RefSeqiXP_015637332.1. XM_015781846.1.
UniGeneiOs.4626.

Genome annotation databases

EnsemblPlantsiOS05T0389700-01; OS05T0389700-01; OS05G0389700.
GeneIDi4338674.
GrameneiOS05T0389700-01; OS05T0389700-01; OS05G0389700.
KEGGiosa:4338674.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC105773 Genomic DNA. Translation: AAT47442.1.
AP008211 Genomic DNA. Translation: BAF17350.1.
AP014961 Genomic DNA. Translation: BAS93836.1.
CM000142 Genomic DNA. Translation: EEE63594.1.
AK073808 mRNA. Translation: BAG93649.1.
RefSeqiXP_015637332.1. XM_015781846.1.
UniGeneiOs.4626.

3D structure databases

ProteinModelPortaliQ6I5Y0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os05g32360.1.

Proteomic databases

PaxDbiQ6I5Y0.
PRIDEiQ6I5Y0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS05T0389700-01; OS05T0389700-01; OS05G0389700.
GeneIDi4338674.
GrameneiOS05T0389700-01; OS05T0389700-01; OS05G0389700.
KEGGiosa:4338674.

Phylogenomic databases

eggNOGiKOG0600. Eukaryota.
ENOG410XPIR. LUCA.
HOGENOMiHOG000233024.
InParanoidiQ6I5Y0.
KOiK08819.
OMAiNNPHAPI.
OrthoDBiEOG093607V4.

Enzyme and pathway databases

ReactomeiR-OSA-674695. RNA Polymerase II Pre-transcription Events.

Gene expression databases

GenevisibleiQ6I5Y0. OS.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCDKC1_ORYSJ
AccessioniPrimary (citable) accession number: Q6I5Y0
Secondary accession number(s): B7EMQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: July 19, 2004
Last modified: November 30, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.