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Q6I5Y0 (CDKC1_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Cyclin-dependent kinase C-1

Short name=CDKC;1
EC=2.7.11.22
EC=2.7.11.23
Gene names
Name:CDKC-1
Ordered Locus Names:Os05g0389700, LOC_Os05g32360
ORF Names:OJ1562_H01.5
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length519 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Induction

By auxin. Down-regulated by cytokinin. Ref.5

Sequence similarities

Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.

Contains 1 protein kinase domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 519519Cyclin-dependent kinase C-1
PRO_0000296100

Regions

Domain25 – 325301Protein kinase
Nucleotide binding31 – 399ATP By similarity

Sites

Active site1641Proton acceptor By similarity
Binding site541ATP By similarity

Amino acid modifications

Modified residue351Phosphothreonine By similarity
Modified residue361Phosphotyrosine By similarity
Modified residue1981Phosphothreonine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q6I5Y0 [UniParc].

Last modified July 19, 2004. Version 1.
Checksum: 8CF0E99557E0E05C

FASTA51957,451
        10         20         30         40         50         60 
MAVAAPGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MARETETQEI VALKKIRMDN 

        70         80         90        100        110        120 
EREGFPITAI REIKILKKLH HQNVIQLKEI VTSPGPERDE QGKPIHGNKY KGSIYMVFEY 

       130        140        150        160        170        180 
MDHDLTGLAD RPGMRFTVPQ IKCYMKQLLT GLHYCHINQV LHRDIKGSNL LIDNEGNLKL 

       190        200        210        220        230        240 
ADFGLARSFS NDHNGNLTNR VITLWYRPPE LLLGSTKYGP AVDMWSVGCI FAELLNGKPI 

       250        260        270        280        290        300 
LPGKNEPEQL SKIFDVCGTP DESNWPGVTK MPWYNNFKPP RQLKRRVKEY FKHFDRLALD 

       310        320        330        340        350        360 
LLEKMLTLDP AQRISAQDAL DAEYFWSDPL PCDPKSLPKY ESSHEFQTKK KRQQMRQADE 

       370        380        390        400        410        420 
AAKRQKTQHP QPHGRLPPIQ QTGQPHPQIR PGQPMNNPHA PMAAGPGHHY AKPRGPGGSS 

       430        440        450        460        470        480 
RYPQGGNQGG GYPNRGGQGG GGSYGNAPYP QQGRGPPPPY PGSGMAGTGG PRGGVGGGYG 

       490        500        510 
GGSNYPQQGG PYGPSGPGRG SNYPQQGGSR NQQQYGNWQ 

« Hide

References

« Hide 'large scale' references
[1]"A fine physical map of the rice chromosome 5."
Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.
Mol. Genet. Genomics 274:337-345(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.
[5]"Genome-wide identification and expression analysis of rice cell cycle genes."
Guo J., Song J., Wang F., Zhang X.S.
Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: INDUCTION, GENE FAMILY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC105773 Genomic DNA. Translation: AAT47442.1.
AP008211 Genomic DNA. Translation: BAF17350.1.
AK073808 mRNA. No translation available.
RefSeqNP_001055436.1. NM_001061971.1.
UniGeneOs.4626.

3D structure databases

ProteinModelPortalQ6I5Y0.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ6I5Y0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS05T0389700-01; OS05T0389700-01; OS05G0389700.
GeneID4338674.
KEGGosa:4338674.

Organism-specific databases

GrameneQ6I5Y0.

Phylogenomic databases

eggNOGCOG0515.
HOGENOMHOG000233024.
KOK08819.
OMAGYPNRGG.
ProtClustDBCLSN2692317.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR002290. Ser/Thr_dual-sp_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMSSF56112. SSF56112. 1 hit.
PROSITEPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCDKC1_ORYSJ
AccessionPrimary (citable) accession number: Q6I5Y0
Entry history
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: July 19, 2004
Last modified: April 16, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations