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Q6I5Y0

- CDKC1_ORYSJ

UniProt

Q6I5Y0 - CDKC1_ORYSJ

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Protein
Cyclin-dependent kinase C-1
Gene
CDKC-1, Os05g0389700, LOC_Os05g32360, OJ1562_H01.5
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

ATP + a protein = ADP + a phosphoprotein.
ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei54 – 541ATP By similarity
Active sitei164 – 1641Proton acceptor By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi31 – 399ATP By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. RNA polymerase II carboxy-terminal domain kinase activity Source: UniProtKB-EC
  3. cyclin-dependent protein serine/threonine kinase activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. carpel development Source: EnsemblPlants/Gramene
  2. leaf development Source: EnsemblPlants/Gramene
  3. mRNA processing Source: EnsemblPlants/Gramene
  4. regulation of viral process Source: EnsemblPlants/Gramene
  5. response to virus Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Serine/threonine-protein kinase, Transferase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclin-dependent kinase C-1 (EC:2.7.11.22, EC:2.7.11.23)
Short name:
CDKC;1
Gene namesi
Name:CDKC-1
Ordered Locus Names:Os05g0389700, LOC_Os05g32360
ORF Names:OJ1562_H01.5
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 5

Organism-specific databases

GrameneiQ6I5Y0.

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: EnsemblPlants/Gramene
  2. nuclear body Source: EnsemblPlants/Gramene
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 519519Cyclin-dependent kinase C-1
PRO_0000296100Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei35 – 351Phosphothreonine By similarity
Modified residuei36 – 361Phosphotyrosine By similarity
Modified residuei198 – 1981Phosphothreonine By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PRIDEiQ6I5Y0.

Expressioni

Inductioni

By auxin. Down-regulated by cytokinin.1 Publication

Structurei

3D structure databases

ProteinModelPortaliQ6I5Y0.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 325301Protein kinase
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0515.
HOGENOMiHOG000233024.
KOiK08819.
OMAiHHENVIH.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR002290. Ser/Thr_dual-sp_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6I5Y0-1 [UniParc]FASTAAdd to Basket

« Hide

MAVAAPGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MARETETQEI    50
VALKKIRMDN EREGFPITAI REIKILKKLH HQNVIQLKEI VTSPGPERDE 100
QGKPIHGNKY KGSIYMVFEY MDHDLTGLAD RPGMRFTVPQ IKCYMKQLLT 150
GLHYCHINQV LHRDIKGSNL LIDNEGNLKL ADFGLARSFS NDHNGNLTNR 200
VITLWYRPPE LLLGSTKYGP AVDMWSVGCI FAELLNGKPI LPGKNEPEQL 250
SKIFDVCGTP DESNWPGVTK MPWYNNFKPP RQLKRRVKEY FKHFDRLALD 300
LLEKMLTLDP AQRISAQDAL DAEYFWSDPL PCDPKSLPKY ESSHEFQTKK 350
KRQQMRQADE AAKRQKTQHP QPHGRLPPIQ QTGQPHPQIR PGQPMNNPHA 400
PMAAGPGHHY AKPRGPGGSS RYPQGGNQGG GYPNRGGQGG GGSYGNAPYP 450
QQGRGPPPPY PGSGMAGTGG PRGGVGGGYG GGSNYPQQGG PYGPSGPGRG 500
SNYPQQGGSR NQQQYGNWQ 519
Length:519
Mass (Da):57,451
Last modified:July 19, 2004 - v1
Checksum:i8CF0E99557E0E05C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC105773 Genomic DNA. Translation: AAT47442.1.
AP008211 Genomic DNA. Translation: BAF17350.1.
AK073808 mRNA. No translation available.
RefSeqiNP_001055436.1. NM_001061971.1.
UniGeneiOs.4626.

Genome annotation databases

EnsemblPlantsiOS05T0389700-01; OS05T0389700-01; OS05G0389700.
GeneIDi4338674.
KEGGiosa:4338674.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC105773 Genomic DNA. Translation: AAT47442.1 .
AP008211 Genomic DNA. Translation: BAF17350.1 .
AK073808 mRNA. No translation available.
RefSeqi NP_001055436.1. NM_001061971.1.
UniGenei Os.4626.

3D structure databases

ProteinModelPortali Q6I5Y0.
ModBasei Search...

Proteomic databases

PRIDEi Q6I5Y0.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS05T0389700-01 ; OS05T0389700-01 ; OS05G0389700 .
GeneIDi 4338674.
KEGGi osa:4338674.

Organism-specific databases

Gramenei Q6I5Y0.

Phylogenomic databases

eggNOGi COG0515.
HOGENOMi HOG000233024.
KOi K08819.
OMAi HHENVIH.

Family and domain databases

InterProi IPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR002290. Ser/Thr_dual-sp_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view ]
Pfami PF00069. Pkinase. 1 hit.
[Graphical view ]
SMARTi SM00220. S_TKc. 1 hit.
[Graphical view ]
SUPFAMi SSF56112. SSF56112. 1 hit.
PROSITEi PS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  5. "Genome-wide identification and expression analysis of rice cell cycle genes."
    Guo J., Song J., Wang F., Zhang X.S.
    Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION, GENE FAMILY.

Entry informationi

Entry nameiCDKC1_ORYSJ
AccessioniPrimary (citable) accession number: Q6I5Y0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: July 19, 2004
Last modified: May 14, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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