Q6I5Y0 (CDKC1_ORYSJ) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 70.
History...
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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Cyclin-dependent kinase C-1 Short name=CDKC;1 EC=2.7.11.22 EC=2.7.11.23 | ||||||
| Gene names |
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| Organism | Oryza sativa subsp. japonica (Rice) [Reference proteome] | ||||||
| Taxonomic identifier | 39947 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza ›  |
Protein attributes
| Sequence length | 519 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate. |
| Induction | By auxin. Down-regulated by cytokinin. Ref.5 |
| Sequence similarities | Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. Contains 1 protein kinase domain. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 519 | 519 | Cyclin-dependent kinase C-1 | PRO_0000296100 | |||||
Regions | |||||||||
| Domain | 25 – 325 | 301 | Protein kinase | ||||||
| Nucleotide binding | 31 – 39 | 9 | ATP By similarity | ||||||
Sites | |||||||||
| Active site | 164 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 54 | 1 | ATP By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 35 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 36 | 1 | Phosphotyrosine By similarity | ||||||
| Modified residue | 198 | 1 | Phosphothreonine By similarity | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "A fine physical map of the rice chromosome 5." Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y. Mol. Genet. Genomics 274:337-345(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare. |
| [2] | "The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare. |
| [3] | "The rice annotation project database (RAP-DB): 2008 update." The rice annotation project (RAP) Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare. |
| [4] | "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare. |
| [5] | "Genome-wide identification and expression analysis of rice cell cycle genes." Guo J., Song J., Wang F., Zhang X.S. Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INDUCTION, GENE FAMILY. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC105773 Genomic DNA. Translation: AAT47442.1. AP008211 Genomic DNA. Translation: BAF17350.1. AK073808 mRNA. No translation available. |
| RefSeq | NP_001055436.1. NM_001061971.1. |
| UniGene | Os.4626. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1OIT based on UniProtKB P24941. |
| ProteinModelPortal | Q6I5Y0. |
| ModBase | Search... |
Proteomic databases | |
| PRIDE | Q6I5Y0. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | LOC_Os05g32360.1; LOC_Os05g32360.1; LOC_Os05g32360. |
| GeneID | 4338674. |
| KEGG | dosa:Os05t0389700-01. osa:4338674. |
Organism-specific databases | |
| Gramene | Q6I5Y0. |
Phylogenomic databases | |
| eggNOG | COG0515. |
| HOGENOM | HOG000233024. |
| KO | K08819. |
| OMA | HHENVIH. |
| ProtClustDB | CLSN2692317. |
Gene expression databases | |
| ArrayExpress | Q6I5Y0. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR002290. Ser/Thr_dual-sp_kinase_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] |
| Pfam | PF00069. Pkinase. 1 hit. [Graphical view] |
| SMART | SM00220. S_TKc. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | CDKC1_ORYSJ | ||||||||
| Accession | Primary (citable) accession number: Q6I5Y0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Oryza sativa (rice) Index of Oryza sativa entries and their corresponding gene designations |
| SIMILARITY comments Index of protein domains and families |