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Q6HEJ1 (Q6HEJ1_BACHK) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 1 HAMAP MF_00163
Short name=PDF 1 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 1 HAMAP MF_00163
Gene names
Name:def EMBL AAT60682.1
Synonyms:def1 HAMAP MF_00163
Ordered Locus Names:BT9727_3716
OrganismBacillus thuringiensis subsp. konkukian (strain 97-27) [Complete proteome] [HAMAP]
Taxonomic identifier281309 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus › Bacillus cereus group

Protein attributes

Sequence length184 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. SAAS SAAS000181 HAMAP MF_00163

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1541 By similarity HAMAP MF_00163
Metal binding1101Iron By similarity HAMAP MF_00163
Metal binding1531Iron By similarity HAMAP MF_00163
Metal binding1571Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q6HEJ1 [UniParc].

Last modified July 19, 2004. Version 1.
Checksum: 127B5DF528B0A91F

FASTA18420,515
        10         20         30         40         50         60 
MLTMKDVIRE GDPILRNVAE EVVIPASEED TNTLKEMIEF VINSQDPEMA EKYSLRPGIG 

        70         80         90        100        110        120 
LAAPQIGISK KMIAVHVTDT DGTLYSHALF NPKIISHSVE RTYLQSGEGC LSVDREVPGY 

       130        140        150        160        170        180 
VPRYTRITVK ATSINGEEVK LRLKGLPAIV FQHEIDHLNG VMFYDHINKE NPFAAPDGSK 


PLER

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017355 Genomic DNA. Translation: AAT60682.1.
RefSeqYP_038035.1. NC_005957.1.

3D structure databases

ProteinModelPortalQ6HEJ1.
SMRQ6HEJ1. Positions 1-184.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBBACT00000071968; EBBACP00000070054; EBBACG00000071959.
GeneID2854320.
GenomeReviewsGene locus BT9727_3716 in contig AE017355_GR.
KEGGbtk:BT9727_3716.
PATRIC18988464. VBIBacThu119411_3958.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000001175.
HOGENOMHBG665227.
OMAADGEGCL.
ProtClustDBPRK00150.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ6HEJ1_BACHK
AccessionPrimary (citable) accession number: Q6HEJ1
Entry history
Integrated into UniProtKB/TrEMBL: July 19, 2004
Last sequence update: July 19, 2004
Last modified: January 25, 2012
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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