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Protein
Submitted name:

MGC69225 protein

Gene

idh1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_324542. NADPH regeneration.

Names & Taxonomyi

Protein namesi
Submitted name:
MGC69225 proteinImported
Gene namesi
Name:idh1Imported
Synonyms:MGC69225Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Organism-specific databases

XenbaseiXB-GENE-1004994. idh1.

PTM / Processingi

Proteomic databases

PaxDbiQ6GL17.

Expressioni

Gene expression databases

BgeeiQ6GL17.
ExpressionAtlasiQ6GL17. baseline.

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000017597.

Structurei

3D structure databases

ProteinModelPortaliQ6GL17.
SMRiQ6GL17. Positions 1-284.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the isocitrate and isopropylmalate dehydrogenases family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0538.
HOGENOMiHOG000019858.
HOVERGENiHBG006119.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR004790. Isocitrate_DH_NADP.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11822. PTHR11822. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00127. nadp_idh_euk. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6GL17-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKKINGGSV VEMQGDEMTR VIWDLIKEKL ILPYVELDLH CYDLGIENRD
60 70 80 90 100
ATDDQVTVDA AEAIKKYNVG IKCATITPDE KRVEEFNLKQ MWKSPNGTIR
110 120 130 140 150
NILGGTVFRE AIICKNIPRL VSGWVKPIII GRHAYGDQYR ATDFVVPGPG
160 170 180 190 200
KVEISFTPKD GGEAIKYVIH NFEDCGGVAL GMYNTDQSIR DFAHSSFQMA
210 220 230 240 250
LSKSWPLYMS TKNTILKKYD GRFKDIFQEI YEKDYKSQFE EKKIWYEHRL
260 270 280
IDDMVAQAMK SEGGFIWACK NYDGDVQSDS VAQG
Length:284
Mass (Da):32,326
Last modified:July 19, 2004 - v1
Checksum:i28302B9D9E75CB9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC074702 mRNA. Translation: AAH74702.1.
RefSeqiNP_001004863.1. NM_001004863.1.
UniGeneiStr.17063.

Genome annotation databases

GeneIDi448164.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC074702 mRNA. Translation: AAH74702.1.
RefSeqiNP_001004863.1. NM_001004863.1.
UniGeneiStr.17063.

3D structure databases

ProteinModelPortaliQ6GL17.
SMRiQ6GL17. Positions 1-284.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000017597.

Proteomic databases

PaxDbiQ6GL17.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi448164.

Organism-specific databases

CTDi3417.
XenbaseiXB-GENE-1004994. idh1.

Phylogenomic databases

eggNOGiCOG0538.
HOGENOMiHOG000019858.
HOVERGENiHBG006119.

Enzyme and pathway databases

ReactomeiREACT_324542. NADPH regeneration.

Gene expression databases

BgeeiQ6GL17.
ExpressionAtlasiQ6GL17. baseline.

Family and domain databases

Gene3Di3.40.718.10. 1 hit.
InterProiIPR004790. Isocitrate_DH_NADP.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERiPTHR11822. PTHR11822. 1 hit.
PfamiPF00180. Iso_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00127. nadp_idh_euk. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.

Entry informationi

Entry nameiQ6GL17_XENTR
AccessioniPrimary (citable) accession number: Q6GL17
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2004
Last sequence update: July 19, 2004
Last modified: May 27, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.