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Protein

Ribulokinase

Gene

araB

Organism
Staphylococcus aureus (strain MSSA476)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate.UniRule annotation

Pathwayi: L-arabinose degradation via L-ribulose

This protein is involved in step 2 of the subpathway that synthesizes D-xylulose 5-phosphate from L-arabinose (bacterial route).UniRule annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. Ribulokinase (araB)
  3. no protein annotated in this organism
This subpathway is part of the pathway L-arabinose degradation via L-ribulose, which is itself part of Carbohydrate degradation.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes D-xylulose 5-phosphate from L-arabinose (bacterial route), the pathway L-arabinose degradation via L-ribulose and in Carbohydrate degradation.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Arabinose catabolism, Carbohydrate metabolism

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

UniPathwayiUPA00145; UER00566.

Names & Taxonomyi

Protein namesi
Recommended name:
RibulokinaseUniRule annotation (EC:2.7.1.16UniRule annotation)
Gene namesi
Name:araBUniRule annotation
Ordered Locus Names:SAS0510
OrganismiStaphylococcus aureus (strain MSSA476)
Taxonomic identifieri282459 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001983701 – 545RibulokinaseAdd BLAST545

Structurei

3D structure databases

ProteinModelPortaliQ6GBT5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribulokinase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000236884.
KOiK00853.
OMAiACTMLPI.

Family and domain databases

CDDicd07781. FGGY_RBK. 1 hit.
HAMAPiMF_00520. Ribulokinase. 1 hit.
InterProiIPR000577. Carb_kinase_FGGY.
IPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. Ribulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000538. GlpK. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6GBT5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYSIGIDYG TASGRVFLIN TTNGQVVSKF VKPYTHGVIE SELNGLKIPH
60 70 80 90 100
TYALQNSNDY LEIMEEGISY IVRESKIDPD NIVGIGIDFT SSTIIFTDEN
110 120 130 140 150
LNPVHNLKQF KNNPHAYVKL WKHHGAYKEA EKLYQTAIEN NNKWLGHYGY
160 170 180 190 200
NVSSEWMIPK IMEVMNRAPE IMEKTAYIME AGDWIVNKLT NKNIRSNCGL
210 220 230 240 250
GFKAFWEEET GFHYDLFDKI DPKLSKVIQD KVSAPVVNIG EAVGKLDDKM
260 270 280 290 300
AQKLGLSKET MVSPFIIDAH ASLLGIGSEK DKEMTMVMGT STCHLMLNEK
310 320 330 340 350
QHQVPGISGS VKGAIIPELF AYEAGQSAVG DLFEYVAKQA PKSYVDEAAN
360 370 380 390 400
RNMTVFELMN EKIKHQMPGE SGLIALDWHN GNRSVLSDSN LTGCIFGLTL
410 420 430 440 450
QTKHEDIYRA YLEATAFGTK MIMQQYQDWH MEVEKVFACG GIPKKNAVMM
460 470 480 490 500
DIYANVLNKK LIVMDSEYAP AIGAAILGAV SGGAHNSIND AVDAMKEPIL
510 520 530 540
YEINPEAEKV QRYETLFKAY KALHDIHGYK KANIMKDIQS LRVEG
Length:545
Mass (Da):60,967
Last modified:July 19, 2004 - v1
Checksum:i9DFD11D67B668C74
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX571857 Genomic DNA. Translation: CAG42285.1.
RefSeqiWP_000122337.1. NC_002953.3.

Genome annotation databases

KEGGisas:SAS0510.
PATRICi19550428. VBIStaAur96780_0532.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX571857 Genomic DNA. Translation: CAG42285.1.
RefSeqiWP_000122337.1. NC_002953.3.

3D structure databases

ProteinModelPortaliQ6GBT5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

KEGGisas:SAS0510.
PATRICi19550428. VBIStaAur96780_0532.

Phylogenomic databases

HOGENOMiHOG000236884.
KOiK00853.
OMAiACTMLPI.

Enzyme and pathway databases

UniPathwayiUPA00145; UER00566.

Family and domain databases

CDDicd07781. FGGY_RBK. 1 hit.
HAMAPiMF_00520. Ribulokinase. 1 hit.
InterProiIPR000577. Carb_kinase_FGGY.
IPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. Ribulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000538. GlpK. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiARAB_STAAS
AccessioniPrimary (citable) accession number: Q6GBT5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: July 19, 2004
Last modified: October 5, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.