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Reviewed, UniProtKB/Swiss-Prot Q6F9C2 (RNC_ACIAD)

Last modified November 3, 2009. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Ribonuclease 3
    EC=3.1.26.3
Alternative name(s):
    Ribonuclease III
      Short name=RNase III
Gene names
Name: rnc
Ordered Locus Names: ACIAD2581
OrganismAcinetobacter sp. (strain ADP1) [Complete proteome] [HAMAP]
Taxonomic identifier62977 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesMoraxellaceaeAcinetobacter

Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs By similarity.

Catalytic activity

Endonucleolytic cleavage to 5'-phosphomonoester. HAMAP MF_00104

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Contains 1 DRBM (double-stranded RNA-binding) domain.

Contains 1 RNase III domain.

Ontologies

Keywords
   Cellular componentCytoplasm
   LigandRNA-binding
   Molecular functionEndonuclease
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processmRNA processing

Inferred from electronic annotation. Source: HAMAP

rRNA catabolic process

Inferred from electronic annotation. Source: InterPro

rRNA processing

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functiondouble-stranded RNA binding

Inferred from electronic annotation. Source: InterPro

ribonuclease III activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 230230Ribonuclease 3 HAMAP MF_00104
PRO_0000228488

Regions

Domain10 – 133124RNase III
Domain161 – 23070DRBM

Sequences

Sequence LengthMass (Da)Tools
Q6F9C2-1 [UniParc].

Last modified July 19, 2004. Version 1.
Checksum: 6C279B0D58BA4223

FASTA23026,270
        10         20         30         40         50         60 
MIKTQSKLSD PRLQSRIGYE FKQLELLQLA LTHRSVSHKY NYERLEFLGD SLLGMIIANY 

        70         80         90        100        110        120 
LYQAYPHENE GRLTRMRATL VRQEALGKIA NDLKLSRCLI LSTGELKSGG HHRESILADT 

       130        140        150        160        170        180 
VEAIIGAIYV DSNDLNLLKN IVLKWYIPYL DHIEPTDQLK DPKSRLQEYL QARKKPLPVY 

       190        200        210        220        230 
EVVDIQGDAP NQHFKVVCLV EGLPRVMGEG SSRRFAEQTA AAEILKLLEQ 

« Hide

References

[1]"Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium."
Barbe V., Vallenet D., Fonknechten N., Kreimeyer A., Oztas S., Labarre L., Cruveiller S., Robert C., Duprat S., Wincker P., Ornston L.N., Weissenbach J., Marliere P., Cohen G.N., Medigue C.
Nucleic Acids Res. 32:5766-5779(2004) [PubMed: 15514110] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

CR543861 Genomic DNA. Translation: CAG69343.1.
RefSeqYP_047165.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ6F9C2.

Genome annotation databases

GeneID2879534.
GenomeReviewsGene locus ACIAD2581 in contig CR543861_GR.
KEGGaci:ACIAD2581.
NMPDRfig|62977.3.peg.2358.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ6F9C2.
OMAALTHKSF.

Enzyme and pathway databases

BioCycASP62977:ACIAD2581-MON.

Family and domain databases

HAMAPMF_00104.
[Tree]
InterProIPR001159. Ds-RNA_bd.
IPR014720. dsRNA-bd-like.
IPR000999. RNase_III.
IPR011907. RNase_III_bac.
[Graphical view]
Gene3DG3DSA:3.30.160.20. dsRNA-bd-like. 1 hit.
G3DSA:1.10.1520.10. RNase_III. 1 hit.
PfamPF00035. dsrm. 1 hit.
PF00636. Ribonuclease_3. 1 hit.
[Graphical view]
SMARTSM00358. DSRM. 1 hit.
SM00535. RIBOc. 1 hit.
[Graphical view]
TIGRFAMsTIGR02191. RNaseIII. 1 hit.
PROSITEPS50137. DS_RBD. 1 hit.
PS00517. RNASE_3_1. 1 hit.
PS50142. RNASE_3_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRNC_ACIAD
AccessionPrimary (citable) accession number: Q6F9C2
Entry history
Integrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: July 19, 2004
Last modified: November 3, 2009
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents