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Protein
Submitted name:

60S ribosomal protein L9

Gene

rpl9

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-DRE-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DRE-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DRE-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DRE-72689 Formation of a pool of free 40S subunits
R-DRE-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DRE-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DRE-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L9Imported
Submitted name:
Ribosomal protein L9Imported
Gene namesi
Name:rpl9Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 1

Organism-specific databases

ZFINiZDB-GENE-030131-8646 rpl9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSDARG00000037350

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000054339

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 85Ribosomal_L6InterPro annotationAdd BLAST74
Domaini99 – 178Ribosomal_L6InterPro annotationAdd BLAST80

Phylogenomic databases

eggNOGiKOG3255 Eukaryota
COG0097 LUCA
GeneTreeiENSGT00390000015224
HOGENOMiHOG000039905
HOVERGENiHBG000942
KOiK02940
OrthoDBiEOG091G0R6Z
TreeFamiTF300033

Family and domain databases

Gene3Di3.90.930.122 hits
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q6DRM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILSNQTV DIPDNVTVSL KGRTVTVKGP RGVLRREFNH INLELSLLGK
60 70 80 90 100
KQKKLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP
110 120 130 140 150
INVVIQESGS LVEIRNFLGE KYIRRVRMRQ GVACAVSAAQ KDELVLEGND
160 170 180 190
IELVSNSAAL IQQATTVRKK DIRKFLDGIY VSEKGTVVEQ QED
Length:193
Mass (Da):21,909
Last modified:August 16, 2004 - v1
Checksum:i23E34084FE08A21B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR759875 Genomic DNA No translation available.
AY648736 mRNA Translation: AAT68054.1
RefSeqiNP_001003861.1, NM_001003861.1
XP_005170963.1, XM_005170906.3
UniGeneiDr.29079

Genome annotation databases

EnsembliENSDART00000054340; ENSDARP00000054339; ENSDARG00000037350
GeneIDi336702
KEGGidre:336702

Similar proteinsi

Entry informationi

Entry nameiQ6DRM3_DANRE
AccessioniPrimary (citable) accession number: Q6DRM3
Entry historyiIntegrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: March 28, 2018
This is version 109 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported