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Protein
Submitted name:

60S ribosomal protein L9

Gene

rpl9

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-DRE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DRE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DRE-6791226. Major pathway of rRNA processing in the nucleolus.
R-DRE-72689. Formation of a pool of free 40S subunits.
R-DRE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DRE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DRE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
60S ribosomal protein L9Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:rpl9Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 1

Organism-specific databases

ZFINiZDB-GENE-030131-8646. rpl9.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSDARG00000037350.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000054339.

Structurei

3D structure databases

SMRiQ6DRM3. Positions 10-184.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini12 – 8574Ribosomal_L6InterPro annotationAdd
BLAST
Domaini99 – 17880Ribosomal_L6InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
HOVERGENiHBG000942.
KOiK02940.
OMAiSRKELAC.
OrthoDBiEOG091G0R6Z.
TreeFamiTF300033.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6DRM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILSNQTV DIPDNVTVSL KGRTVTVKGP RGVLRREFNH INLELSLLGK
60 70 80 90 100
KQKKLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP
110 120 130 140 150
INVVIQESGS LVEIRNFLGE KYIRRVRMRQ GVACAVSAAQ KDELVLEGND
160 170 180 190
IELVSNSAAL IQQATTVRKK DIRKFLDGIY VSEKGTVVEQ QED
Length:193
Mass (Da):21,909
Last modified:August 16, 2004 - v1
Checksum:i23E34084FE08A21B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR759875 Genomic DNA. No translation available.
AY648736 mRNA. Translation: AAT68054.1.
RefSeqiNP_001003861.1. NM_001003861.1.
XP_005170963.1. XM_005170906.2.
UniGeneiDr.29079.

Genome annotation databases

EnsembliENSDART00000054340; ENSDARP00000054339; ENSDARG00000037350.
GeneIDi336702.
KEGGidre:336702.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR759875 Genomic DNA. No translation available.
AY648736 mRNA. Translation: AAT68054.1.
RefSeqiNP_001003861.1. NM_001003861.1.
XP_005170963.1. XM_005170906.2.
UniGeneiDr.29079.

3D structure databases

SMRiQ6DRM3. Positions 10-184.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000054339.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000054340; ENSDARP00000054339; ENSDARG00000037350.
GeneIDi336702.
KEGGidre:336702.

Organism-specific databases

CTDi6133.
ZFINiZDB-GENE-030131-8646. rpl9.

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
GeneTreeiENSGT00390000015224.
HOGENOMiHOG000039905.
HOVERGENiHBG000942.
KOiK02940.
OMAiSRKELAC.
OrthoDBiEOG091G0R6Z.
TreeFamiTF300033.

Enzyme and pathway databases

ReactomeiR-DRE-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DRE-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DRE-6791226. Major pathway of rRNA processing in the nucleolus.
R-DRE-72689. Formation of a pool of free 40S subunits.
R-DRE-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DRE-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DRE-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

BgeeiENSDARG00000037350.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ6DRM3_DANRE
AccessioniPrimary (citable) accession number: Q6DRM3
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: September 7, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.