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Q6DQ34

- Q6DQ34_9INFA

UniProt

Q6DQ34 - Q6DQ34_9INFA

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Protein
Submitted name:

Hemagglutinin

Gene

HA

Organism
Influenza A virus (A/Vietnam/1194/2004(H5N1))
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei234 – 2341FucoseImported

GO - Biological processi

  1. clathrin-mediated endocytosis of virus by host cell Source: UniProtKB-KW
  2. fusion of virus membrane with host endosome membrane Source: UniProtKB-KW
  3. fusion of virus membrane with host plasma membrane Source: InterPro
  4. virion attachment to host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

HemagglutininUniRule annotationSAAS annotation

Keywords - Biological processi

Clathrin- and caveolin-independent endocytosis of virus by hostSAAS annotation, Clathrin-mediated endocytosis of virus by hostSAAS annotation, Fusion of virus membrane with host endosomal membraneSAAS annotation, Fusion of virus membrane with host membrane, Host-virus interaction, Viral attachment to host cellSAAS annotation, Viral penetration into host cytoplasm, Virus endocytosis by host, Virus entry into host cell

Names & Taxonomyi

Protein namesi
Submitted name:
HemagglutininImported
Gene namesi
Name:HAImported
OrganismiInfluenza A virus (A/Vietnam/1194/2004(H5N1))Imported
Taxonomic identifieri644788 [NCBI]
Taxonomic lineageiVirusesssRNA negative-strand virusesOrthomyxoviridaeInfluenzavirus A

Subcellular locationi

Virion membrane SAAS annotation; Single-pass type I membrane protein SAAS annotation. Host apical cell membrane SAAS annotation; Single-pass type I membrane protein SAAS annotation

GO - Cellular componenti

  1. host cell plasma membrane Source: UniProtKB-SubCell
  2. integral component of membrane Source: UniProtKB-KW
  3. viral envelope Source: UniProtKB-KW
  4. virion membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Host cell membraneSAAS annotation, Host membrane, Membrane, Viral envelope proteinUniRule annotationSAAS annotation, Virion

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi27 – 271N-linked (GlcNAc...)Imported
Glycosylationi39 – 391N-linked (GlcNAc...)Imported
Glycosylationi170 – 1701N-linked (GlcNAc...)Imported
Glycosylationi181 – 1811N-linked (GlcNAc...)Imported
Glycosylationi302 – 3021N-linked (GlcNAc...)Imported
Glycosylationi500 – 5001N-linked (GlcNAc...)Imported

Keywords - PTMi

Disulfide bondSAAS annotation

Interactioni

Subunit structurei

Homotrimer of disulfide-linked HA1-HA2.UniRule annotationSAAS annotation

Protein-protein interaction databases

DIPiDIP-60226N.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ZNKX-ray2.71A/C/E17-340[»]
3ZNLX-ray2.50A/C/E17-340[»]
B/D/F347-512[»]
3ZNMX-ray2.40A/C/E17-340[»]
B/D/F347-512[»]
3ZP0X-ray2.51E1-340[»]
F347-506[»]
3ZP1X-ray2.60E17-342[»]
F347-512[»]
3ZP2X-ray2.50E17-342[»]
F347-512[»]
3ZP3X-ray2.65E1-340[»]
F347-506[»]
3ZP6X-ray2.60E1-340[»]
F347-506[»]
3ZPAX-ray2.50E1-340[»]
F347-506[»]
3ZPBX-ray2.60E1-340[»]
F347-506[»]
4BGWX-ray2.48A17-340[»]
B347-512[»]
4BGXX-ray2.48A17-340[»]
B347-512[»]
4BGYX-ray2.68A17-340[»]
B347-512[»]
4CQPX-ray2.65A17-340[»]
B347-512[»]
4CQQX-ray2.55A17-340[»]
B347-512[»]
4CQRX-ray2.45A17-340[»]
B347-512[»]
4CQSX-ray2.55A17-340[»]
B347-512[»]
4CQTX-ray2.55A17-340[»]
B347-512[»]
4CQUX-ray2.48A17-340[»]
B347-512[»]
4CQZX-ray2.70A17-340[»]
B347-512[»]
4CR0X-ray2.65A17-340[»]
B347-512[»]
ProteinModelPortaliQ6DQ34.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6DQ34.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni237 – 2382Galactose bindingImported

Sequence similaritiesi

Belongs to the influenza viruses hemagglutinin family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotation

Family and domain databases

Gene3Di2.10.77.10. 1 hit.
3.90.20.10. 1 hit.
3.90.209.20. 1 hit.
InterProiIPR008980. Capsid_hemagglutn.
IPR013828. Hemagglutn_HA1_a/b_dom.
IPR013827. Hemagglutn_HA1_b-rbn_dom.
IPR000149. Hemagglutn_influenz_A.
IPR001364. Hemagglutn_influenz_A/B.
IPR013829. Hemagglutn_stalk.
[Graphical view]
PfamiPF00509. Hemagglutinin. 1 hit.
[Graphical view]
PRINTSiPR00330. HEMAGGLUTN1.
PR00329. HEMAGGLUTN12.
SUPFAMiSSF49818. SSF49818. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q6DQ34-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEKIVLLFAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV TVTHAQDILE
60 70 80 90 100
KTHNGKLCDL DGVKPLILRD CSVAGWLLGN PMCDEFINVP EWSYIVEKAN
110 120 130 140 150
PVNDLCYPGD FNDYEELKHL LSRINHFEKI QIIPKSSWSS HEASLGVSSA
160 170 180 190 200
CPYQGKSSFF RNVVWLIKKN STYPTIKRSY NNTNQEDLLV LWGIHHPNDA
210 220 230 240 250
AEQTKLYQNP TTYISVGTST LNQRLVPRIA TRSKVNGQSG RMEFFWTILK
260 270 280 290 300
PNDAINFESN GNFIAPEYAY KIVKKGDSTI MKSELEYGNC NTKCQTPMGA
310 320 330 340 350
INSSMPFHNI HPLTIGECPK YVKSNRLVLA TGLRNSPQRE RRRKKRGLFG
360 370 380 390 400
AIAGFIEGGW QGMVDGWYGY HHSNEQGSGY AADKESTQKA IDGVTNKVNS
410 420 430 440 450
IIDKMNTQFE AVGREFNNLE RRIENLNKKM EDGFLDVWTY NAELLVLMEN
460 470 480 490 500
ERTLDFHDSN VKNLYDKVRL QLRDNAKELG NGCFEFYHKC DNECMESVRN
510 520 530 540 550
GTYDYPQYSE EARLKREEIS GVKLESIGIY QILSIYSTVA SSLALAIMVA
560
GLSLWMCSNG SLQCR
Length:565
Mass (Da):64,105
Last modified:August 16, 2004 - v1
Checksum:iF2ACE6D25A5A2B34
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei565 – 5651Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY651333 Viral cRNA. Translation: AAT73273.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY651333 Viral cRNA. Translation: AAT73273.1 .

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3ZNK X-ray 2.71 A/C/E 17-340 [» ]
3ZNL X-ray 2.50 A/C/E 17-340 [» ]
B/D/F 347-512 [» ]
3ZNM X-ray 2.40 A/C/E 17-340 [» ]
B/D/F 347-512 [» ]
3ZP0 X-ray 2.51 E 1-340 [» ]
F 347-506 [» ]
3ZP1 X-ray 2.60 E 17-342 [» ]
F 347-512 [» ]
3ZP2 X-ray 2.50 E 17-342 [» ]
F 347-512 [» ]
3ZP3 X-ray 2.65 E 1-340 [» ]
F 347-506 [» ]
3ZP6 X-ray 2.60 E 1-340 [» ]
F 347-506 [» ]
3ZPA X-ray 2.50 E 1-340 [» ]
F 347-506 [» ]
3ZPB X-ray 2.60 E 1-340 [» ]
F 347-506 [» ]
4BGW X-ray 2.48 A 17-340 [» ]
B 347-512 [» ]
4BGX X-ray 2.48 A 17-340 [» ]
B 347-512 [» ]
4BGY X-ray 2.68 A 17-340 [» ]
B 347-512 [» ]
4CQP X-ray 2.65 A 17-340 [» ]
B 347-512 [» ]
4CQQ X-ray 2.55 A 17-340 [» ]
B 347-512 [» ]
4CQR X-ray 2.45 A 17-340 [» ]
B 347-512 [» ]
4CQS X-ray 2.55 A 17-340 [» ]
B 347-512 [» ]
4CQT X-ray 2.55 A 17-340 [» ]
B 347-512 [» ]
4CQU X-ray 2.48 A 17-340 [» ]
B 347-512 [» ]
4CQZ X-ray 2.70 A 17-340 [» ]
B 347-512 [» ]
4CR0 X-ray 2.65 A 17-340 [» ]
B 347-512 [» ]
ProteinModelPortali Q6DQ34.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-60226N.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Miscellaneous databases

EvolutionaryTracei Q6DQ34.

Family and domain databases

Gene3Di 2.10.77.10. 1 hit.
3.90.20.10. 1 hit.
3.90.209.20. 1 hit.
InterProi IPR008980. Capsid_hemagglutn.
IPR013828. Hemagglutn_HA1_a/b_dom.
IPR013827. Hemagglutn_HA1_b-rbn_dom.
IPR000149. Hemagglutn_influenz_A.
IPR001364. Hemagglutn_influenz_A/B.
IPR013829. Hemagglutn_stalk.
[Graphical view ]
Pfami PF00509. Hemagglutinin. 1 hit.
[Graphical view ]
PRINTSi PR00330. HEMAGGLUTN1.
PR00329. HEMAGGLUTN12.
SUPFAMi SSF49818. SSF49818. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A/Viet Nam/1194/2004Imported.
  2. "Receptor binding by a ferret-transmissible H5 avian influenza virus."
    Xiong X., Coombs P.J., Martin S.R., Liu J., Xiao H., McCauley J.W., Locher K., Walker P.A., Collins P.J., Kawaoka Y., Skehel J.J., Gamblin S.J.
    Nature 497:392-396(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.48 ANGSTROMS) OF 17-340 AND 347-512 IN COMPLEX WITH GALACTOSE, GLYCOSYLATION AT ASN-39; ASN-181 AND ASN-500.
  3. Cited for: X-RAY CRYSTALLOGRAPHY (2.50 ANGSTROMS) OF 1-340 AND 347-506 IN COMPLEX WITH GALACTOSE, GLYCOSYLATION AT ASN-27; ASN-39 AND ASN-181.
  4. "Recognition of sulphated and fucosylated receptor sialosides by A/Vietnam/1194/2004 (H5N1) influenza virus."
    Xiong X., Tuzikov A., Coombs P.J., Martin S.R., Walker P.A., Gamblin S.J., Bovin N., Skehel J.J.
    Virus Res. 178:12-14(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 17-340 AND 347-512 IN COMPLEX WITH FUCOSE, GLYCOSYLATION AT ASN-39; ASN-181 AND ASN-500.
  5. "Enhanced human receptor binding by H5 haemagglutinins."
    Xiong X., Xiao H., Martin S.R., Coombs P.J., Liu J., Collins P.J., Vachieri S.G., Walker P.A., Lin Y.P., McCauley J.W., Gamblin S.J., Skehel J.J.
    Virology 456-457:179-187(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS) OF 17-340 AND 347-512 IN COMPLEX WITH GALACTOSE, GLYCOSYLATION AT ASN-27; ASN-39; ASN-170; ASN-181; ASN-302 AND ASN-500.

Entry informationi

Entry nameiQ6DQ34_9INFA
AccessioniPrimary (citable) accession number: Q6DQ34
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: October 29, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3