Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Poly(A) polymerase beta (Testis specific)

Gene

papolg

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Poly(A) polymerase beta (Testis specific)Imported
Gene namesi
Name:papolgImported
Synonyms:papolbImported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Organism-specific databases

XenbaseiXB-GENE-979168. papolg.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ6DJR7.

Expressioni

Gene expression databases

BgeeiQ6DJR7.

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000004695.

Structurei

3D structure databases

ProteinModelPortaliQ6DJR7.
SMRiQ6DJR7. Positions 18-495.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 362344PAP_centralInterPro annotationAdd
BLAST
Domaini92 – 16978NTP_transf_2InterPro annotationAdd
BLAST
Domaini364 – 42865PAP_RNA-bindInterPro annotationAdd
BLAST
Domaini427 – 50478PAP_RNA-bindInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2245. Eukaryota.
COG5186. LUCA.
HOGENOMiHOG000204376.
HOVERGENiHBG053502.
KOiK14376.

Family and domain databases

Gene3Di3.30.70.590. 1 hit.
InterProiIPR011068. NuclTrfase_I_C.
IPR007012. PolA_pol_cen_dom.
IPR007010. PolA_pol_RNA-bd_dom.
IPR014492. PolyA_polymerase.
IPR002934. Polymerase_NTP_transf_dom.
[Graphical view]
PANTHERiPTHR10682. PTHR10682. 1 hit.
PfamiPF01909. NTP_transf_2. 1 hit.
PF04928. PAP_central. 1 hit.
PF04926. PAP_RNA-bind. 2 hits.
[Graphical view]
SUPFAMiSSF55003. SSF55003. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6DJR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRETLGSSVL AGQPPKHYGI TSPISLAGPK DTDHIYTQKL TEAMRPFGVF
60 70 80 90 100
EDDAELSHRM VVLGKLNNLV KEWIGELGEQ KSLPPSIISA VGGKIFTFGS
110 120 130 140 150
YRLGVHTKGA DIDSLCVAPR HVERSDFFQS FSEKLKQQDG IKNLRAVEDA
160 170 180 190 200
FVPVIKFEFM NTEIDLVFAR LPLQCIPDNL DLRDDSRLRN LDIRCIRSLN
210 220 230 240 250
GCRVTDEILH LVPNKENFRL TLRAIKLWAK RRGIYSNMLG FLGGVSWAML
260 270 280 290 300
VARTCQLYPN AIASTLVHKF FLVFSKWEWP NPVLLKQPED SNLNLPVWDP
310 320 330 340 350
RVNPADRCHL MPIITPAYPQ QNSTYNVSIS TRSVMVEEFK QGLSVTDEIL
360 370 380 390 400
LGRCDWSKLF EPPNFFHKYK HYIVLTASAS TEEHHLEWVG LVESKIRVLV
410 420 430 440 450
GNLERNSFIT LAHVNPQSFP GNRDHCKDNE YVSMWFLGII FKKVENAESV
460 470 480 490 500
NIDLTHDIQS FTDTVYRQAN NINMLKKGMR IEATHVKRKQ LHHYLHAEVL
510 520 530 540 550
QKRKKQSVPD INRSASALLS KRTSLDGNCL DSSRDTDTGT PCDSPTSCHK
560 570 580 590 600
SSRSDSPSLP DAQRQSLLEK TSTGCSQKMA DVHVHAEPAQ GLSIPVIGSK
610 620 630 640 650
PESAIVVKGL LPPSGCTIPT VVGLNVIPRL PSPPNFSQGN TTQNGLINLS
660 670 680 690 700
PKSAAAKRAH PPCLEDSPKR IRDTEMLLGL PEPTFIEPSV PHEEERQQSG
710 720 730 740 750
ENIIPAGAMP IPTIDRSRSQ RLPSKELPDS SSPVPTNNIR VIKNSIRLTL

NR
Length:752
Mass (Da):84,148
Last modified:August 16, 2004 - v1
Checksum:i11F539430344C2C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC075107 mRNA. Translation: AAH75107.1.
RefSeqiNP_001005684.1. NM_001005684.1.
UniGeneiStr.8755.

Genome annotation databases

GeneIDi448186.
KEGGixtr:448186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC075107 mRNA. Translation: AAH75107.1.
RefSeqiNP_001005684.1. NM_001005684.1.
UniGeneiStr.8755.

3D structure databases

ProteinModelPortaliQ6DJR7.
SMRiQ6DJR7. Positions 18-495.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000004695.

Proteomic databases

PaxDbiQ6DJR7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi448186.
KEGGixtr:448186.

Organism-specific databases

CTDi64895.
XenbaseiXB-GENE-979168. papolg.

Phylogenomic databases

eggNOGiKOG2245. Eukaryota.
COG5186. LUCA.
HOGENOMiHOG000204376.
HOVERGENiHBG053502.
KOiK14376.

Gene expression databases

BgeeiQ6DJR7.

Family and domain databases

Gene3Di3.30.70.590. 1 hit.
InterProiIPR011068. NuclTrfase_I_C.
IPR007012. PolA_pol_cen_dom.
IPR007010. PolA_pol_RNA-bd_dom.
IPR014492. PolyA_polymerase.
IPR002934. Polymerase_NTP_transf_dom.
[Graphical view]
PANTHERiPTHR10682. PTHR10682. 1 hit.
PfamiPF01909. NTP_transf_2. 1 hit.
PF04928. PAP_central. 1 hit.
PF04926. PAP_RNA-bind. 2 hits.
[Graphical view]
SUPFAMiSSF55003. SSF55003. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.

Entry informationi

Entry nameiQ6DJR7_XENTR
AccessioniPrimary (citable) accession number: Q6DJR7
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: May 11, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.