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Protein

60S ribosomal protein L13

Gene

rpl13

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13UniRule annotation
Gene namesi
Name:rpl13Imported
Synonyms:rpl13-provImported
ORF Names:XELAEV_18024869mgImported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus
Proteomesi
  • UP000186698 Componenti: Chromosome 4s

Organism-specific databases

XenbaseiXB-GENE-964826. rpl13.

Subcellular locationi

GO - Cellular componenti

Interactioni

Protein-protein interaction databases

IntActiQ6DJN5. 1 interactor.

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eL13 family.UniRule annotation

Phylogenomic databases

HOVERGENiHBG001156.
KOiK02873.

Family and domain databases

InterProiView protein in InterPro
IPR034295. Ribosomal_L13_euk.
IPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiView protein in Pfam
PF01294. Ribosomal_L13e. 1 hit.
PROSITEiView protein in PROSITE
PS01104. RIBOSOMAL_L13E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6DJN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSRNGMIL KPHFHKDWQR RVTTWFNQPA RKIRRRKARQ VKARLVAPRP
60 70 80 90 100
VSGPVRPVVR CPTNRYHTKV RAGRGFSLEE LKAAGINKKV ARTIGISVDP
110 120 130 140 150
RRRNKSTEGL QTNVQRLKEY RSKLIVFPRK PSAPKKGDST AEELKLATQL
160 170 180 190 200
KGPIMPIRSV YKKEKARVIT EEEKNFKAFA SLRMARANAR LFGIRAKKAK
210
EAAEQDVDKK K
Length:211
Mass (Da):24,198
Last modified:August 16, 2004 - v1
Checksum:iECADD04DD1BD01F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC075140 mRNA. Translation: AAH75140.1.
CM004473 Genomic DNA. Translation: OCT82344.1.
RefSeqiNP_001086472.1. NM_001093003.1.
UniGeneiXl.55401.

Genome annotation databases

GeneIDi446306.
KEGGixla:446306.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC075140 mRNA. Translation: AAH75140.1.
CM004473 Genomic DNA. Translation: OCT82344.1.
RefSeqiNP_001086472.1. NM_001093003.1.
UniGeneiXl.55401.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ6DJN5. 1 interactor.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi446306.
KEGGixla:446306.

Organism-specific databases

CTDi446306.
XenbaseiXB-GENE-964826. rpl13.

Phylogenomic databases

HOVERGENiHBG001156.
KOiK02873.

Family and domain databases

InterProiView protein in InterPro
IPR034295. Ribosomal_L13_euk.
IPR001380. Ribosomal_L13e.
IPR018256. Ribosomal_L13e_CS.
PANTHERiPTHR11722. PTHR11722. 1 hit.
PfamiView protein in Pfam
PF01294. Ribosomal_L13e. 1 hit.
PROSITEiView protein in PROSITE
PS01104. RIBOSOMAL_L13E. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ6DJN5_XENLA
AccessioniPrimary (citable) accession number: Q6DJN5
Entry historyiIntegrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: June 7, 2017
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.