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Q6DI32

- Q6DI32_DANRE

UniProt

Q6DI32 - Q6DI32_DANRE

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Protein
Submitted name:

Snx5 protein

Gene

snx5

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. phosphatidylinositol binding Source: InterPro

GO - Biological processi

  1. intracellular protein transport Source: InterPro
  2. pinocytosis Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Snx5 proteinImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:snx5Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 13

Organism-specific databases

ZFINiZDB-GENE-040426-2857. snx5.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
Mib1Q80SY44EBI-8574974,EBI-645227From a different organism.

Protein-protein interaction databases

MINTiMINT-2841455.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119259.
HOVERGENiHBG000716.
OMAiIKDSCAK.
OrthoDBiEOG7X0VH4.
TreeFamiTF313698.

Family and domain databases

Gene3Di3.30.1520.10. 1 hit.
InterProiIPR001683. Phox.
IPR028654. SNX5.
IPR014637. SNX5/SNX6/SNX32.
IPR015404. Vps5_C.
[Graphical view]
PANTHERiPTHR10555:SF6. PTHR10555:SF6. 1 hit.
PfamiPF00787. PX. 1 hit.
PF09325. Vps5. 1 hit.
[Graphical view]
PIRSFiPIRSF036924. Snx5_Snx6. 1 hit.
SUPFAMiSSF64268. SSF64268. 1 hit.
PROSITEiPS50195. PX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6DI32-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTSISEDSDK EKARSVSVDL NNDASLLIDI PDALCERDKV KFTVHTKTTL
60 70 80 90 100
SSFQKPDFSV PRQHEDFIWL HDAIVETEEY AGLIIPPAPP KPDFEGPREK
110 120 130 140 150
MHKLGEGESS MTKEEYAKMK QELEAEYLAV FKKTVQVHEV FLQRLSSHPS
160 170 180 190 200
FSKDRNFHIF LEYDQDLSVR RKNAKEMFGG FFKNMVKTAD EVLISGVKEV
210 220 230 240 250
DEFFEQEKTF LLDYSNKIKD STAKAEKMTR SHKNVADDYN HISGALNSVA
260 270 280 290 300
ADNNSAFKKH LEKCVEVFEK LRKVEDRVAS DQELKLTELL RYYTRDIQAA
310 320 330 340 350
KDLLYRRARA LADYENSNKA LDKARLKGKD VPQAEENQKQ CLQKFDRLSE
360 370 380 390
SGKKELTSFK ARRVVAFRKN LIEMTELEIK HAKNSMSTLQ GSIELLKSN
Length:399
Mass (Da):45,934
Last modified:August 16, 2004 - v1
Checksum:i03B8EFF4A18A3771
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX005372 Genomic DNA. No translation available.
BC075758 mRNA. Translation: AAH75758.1.
UniGeneiDr.6495.

Genome annotation databases

EnsembliENSDART00000020350; ENSDARP00000018231; ENSDARG00000020442.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX005372 Genomic DNA. No translation available.
BC075758 mRNA. Translation: AAH75758.1 .
UniGenei Dr.6495.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

MINTi MINT-2841455.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000020350 ; ENSDARP00000018231 ; ENSDARG00000020442 .

Organism-specific databases

ZFINi ZDB-GENE-040426-2857. snx5.

Phylogenomic databases

GeneTreei ENSGT00760000119259.
HOVERGENi HBG000716.
OMAi IKDSCAK.
OrthoDBi EOG7X0VH4.
TreeFami TF313698.

Miscellaneous databases

PROi Q6DI32.

Family and domain databases

Gene3Di 3.30.1520.10. 1 hit.
InterProi IPR001683. Phox.
IPR028654. SNX5.
IPR014637. SNX5/SNX6/SNX32.
IPR015404. Vps5_C.
[Graphical view ]
PANTHERi PTHR10555:SF6. PTHR10555:SF6. 1 hit.
Pfami PF00787. PX. 1 hit.
PF09325. Vps5. 1 hit.
[Graphical view ]
PIRSFi PIRSF036924. Snx5_Snx6. 1 hit.
SUPFAMi SSF64268. SSF64268. 1 hit.
PROSITEi PS50195. PX. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: EmbryoImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  3. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ6DI32_DANRE
AccessioniPrimary (citable) accession number: Q6DI32
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: October 29, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3