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Q6DI32

- Q6DI32_DANRE

UniProt

Q6DI32 - Q6DI32_DANRE

Protein
Submitted name:

Snx5 protein

Gene

snx5

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 70 (01 Oct 2014)
      Sequence version 1 (16 Aug 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. phosphatidylinositol binding Source: InterPro
    2. protein binding Source: IntAct

    GO - Biological processi

    1. intracellular protein transport Source: InterPro
    2. pinocytosis Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Snx5 proteinImported
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:snx5Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 13

    Organism-specific databases

    ZFINiZDB-GENE-040426-2857. snx5.

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    Mib1Q80SY44EBI-8574974,EBI-645227From a different organism.

    Protein-protein interaction databases

    MINTiMINT-2841455.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00740000115413.
    HOVERGENiHBG000716.
    InParanoidiQ6DI32.
    OMAiIKDSCAK.
    OrthoDBiEOG7X0VH4.
    TreeFamiTF313698.

    Family and domain databases

    Gene3Di3.30.1520.10. 1 hit.
    InterProiIPR001683. Phox.
    IPR028654. SNX5.
    IPR014637. SNX5/SNX6/SNX32.
    IPR015404. Vps5_C.
    [Graphical view]
    PANTHERiPTHR10555:SF6. PTHR10555:SF6. 1 hit.
    PfamiPF00787. PX. 1 hit.
    PF09325. Vps5. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036924. Snx5_Snx6. 1 hit.
    SUPFAMiSSF64268. SSF64268. 1 hit.
    PROSITEiPS50195. PX. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6DI32-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTSISEDSDK EKARSVSVDL NNDASLLIDI PDALCERDKV KFTVHTKTTL    50
    SSFQKPDFSV PRQHEDFIWL HDAIVETEEY AGLIIPPAPP KPDFEGPREK 100
    MHKLGEGESS MTKEEYAKMK QELEAEYLAV FKKTVQVHEV FLQRLSSHPS 150
    FSKDRNFHIF LEYDQDLSVR RKNAKEMFGG FFKNMVKTAD EVLISGVKEV 200
    DEFFEQEKTF LLDYSNKIKD STAKAEKMTR SHKNVADDYN HISGALNSVA 250
    ADNNSAFKKH LEKCVEVFEK LRKVEDRVAS DQELKLTELL RYYTRDIQAA 300
    KDLLYRRARA LADYENSNKA LDKARLKGKD VPQAEENQKQ CLQKFDRLSE 350
    SGKKELTSFK ARRVVAFRKN LIEMTELEIK HAKNSMSTLQ GSIELLKSN 399
    Length:399
    Mass (Da):45,934
    Last modified:August 16, 2004 - v1
    Checksum:i03B8EFF4A18A3771
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX005372 Genomic DNA. No translation available.
    BC075758 mRNA. Translation: AAH75758.1.
    UniGeneiDr.6495.

    Genome annotation databases

    EnsembliENSDART00000020350; ENSDARP00000018231; ENSDARG00000020442.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX005372 Genomic DNA. No translation available.
    BC075758 mRNA. Translation: AAH75758.1 .
    UniGenei Dr.6495.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    MINTi MINT-2841455.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000020350 ; ENSDARP00000018231 ; ENSDARG00000020442 .

    Organism-specific databases

    ZFINi ZDB-GENE-040426-2857. snx5.

    Phylogenomic databases

    GeneTreei ENSGT00740000115413.
    HOVERGENi HBG000716.
    InParanoidi Q6DI32.
    OMAi IKDSCAK.
    OrthoDBi EOG7X0VH4.
    TreeFami TF313698.

    Miscellaneous databases

    PROi Q6DI32.

    Family and domain databases

    Gene3Di 3.30.1520.10. 1 hit.
    InterProi IPR001683. Phox.
    IPR028654. SNX5.
    IPR014637. SNX5/SNX6/SNX32.
    IPR015404. Vps5_C.
    [Graphical view ]
    PANTHERi PTHR10555:SF6. PTHR10555:SF6. 1 hit.
    Pfami PF00787. PX. 1 hit.
    PF09325. Vps5. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036924. Snx5_Snx6. 1 hit.
    SUPFAMi SSF64268. SSF64268. 1 hit.
    PROSITEi PS50195. PX. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: EmbryoImported.
    2. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.
    3. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiQ6DI32_DANRE
    AccessioniPrimary (citable) accession number: Q6DI32
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 16, 2004
    Last sequence update: August 16, 2004
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3