Q6DI25 (Q6DI25_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
IMP4, U3 small nucleolar ribonucleoprotein, homolog (Yeast) EMBL AAH75765.1

Submitted name:
Uncharacterized protein Ensembl ENSDARP00000071213

Gene names

Name:

imp4 ZFIN ZDB-GENE-040718-474 Ensembl ENSDARP00000071213

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome]

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	291 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Cellular component	Virion
Ligand	Viral nucleoprotein EMBL AAH75765.1
Molecular function	Ribonucleoprotein EMBL AAH75765.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	ribonucleoprotein complex Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleic acid binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6DI25 [UniParc]. Last modified August 16, 2004. Version 1. Checksum: CC9A3E2355E8E643	FASTA	291	34,172
	10 20 30 40 50 60 MLRREVRLRK EYLYRKAQED RLRTIEEKKQ KLKSALDENR LLPTEVRKEA LEVQKLLEFD 70 80 90 100 110 120 DEGGEGVSSH MDDEYKWAGV EDPKIMVTTS RDPSSRLKMF AKEMKLMFPG AQRMNRGNHE 130 140 150 160 170 180 VKTLVHACKS NNVTDLVIVH ETRGQPDGLV VCHLPFGPTA YFTMYNVVMR HDVPDIGTMS 190 200 210 220 230 240 EAYPHLIFHN FTSRLGRRVS NILKYLFPVP KEDSRRVITF ANTDDYISFR HHTYKKTDHK 250 260 270 280 290 NVELTEVGPR FEMKLYMIKL GTLENESTAD VEWRHHPYTR TAKKRKFLSV E

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Embryo EMBL AAH75765.1.
[2]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000071213.
[3]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000071213.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU041374 Genomic DNA. No translation available. BC075765 mRNA. Translation: AAH75765.1.
IPI	IPI00488146.
RefSeq	NP_001002719.1. NM_001002719.1.
UniGene	Dr.19345.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	7955.ENSDARP00000071213.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000076742; ENSDARP00000071213; ENSDARG00000054540.
GeneID	436992.
KEGG	dre:436992.
Organism-specific databases
CTD	92856.
ZFIN	ZDB-GENE-040718-474. imp4.
Phylogenomic databases
eggNOG	COG2136.
GeneTree	ENSGT00550000074987.
HOGENOM	HOG000172063.
HOVERGEN	HBG056795.
InParanoid	Q6DI25.
KO	K14561.
OMA	SHFPHGP.
OrthoDB	EOG4JHCG8.
Family and domain databases
InterPro	IPR004154. Anticodon-bd. IPR007109. Brix. [Graphical view]
Pfam	PF04427. Brix. 1 hit. [Graphical view]
SMART	SM00879. Brix. 1 hit. [Graphical view]
SUPFAM	SSF52954. Anticodon_bd. 1 hit.
PROSITE	PS50833. BRIX. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20831411.

Entry information

Entry name

Q6DI25_DANRE

Accession

Primary (citable) accession number: Q6DI25

Entry history

Integrated into UniProtKB/TrEMBL:	August 16, 2004
Last sequence update:	August 16, 2004
Last modified:	April 3, 2013
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)