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Protein
Submitted name:

Acyl-CoA synthetase short-chain family member 2

Gene

acss2

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_352225. Ethanol oxidation.

Names & Taxonomyi

Protein namesi
Submitted name:
Acyl-CoA synthetase short-chain family member 2Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:acss2Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 23

Organism-specific databases

ZFINiZDB-GENE-040718-388. acss2.

PTM / Processingi

Proteomic databases

PRIDEiQ6DHN4.

Expressioni

Gene expression databases

BgeeiQ6DHN4.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000055053.

Structurei

3D structure databases

ProteinModelPortaliQ6DHN4.
SMRiQ6DHN4. Positions 3-410.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0365.
GeneTreeiENSGT00760000119178.
HOGENOMiHOG000229981.
HOVERGENiHBG014401.
KOiK01895.
PhylomeDBiQ6DHN4.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6DHN4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCWHSLIGGA SEECEPVWCD SEDPLFILYT SGSTGKPKGV LHTVSGYMLY
60 70 80 90 100
TASTFKMVFD YHSDDVYWCT ADIGWITGHS YITYGPLANG ATSVLFEGLP
110 120 130 140 150
TYPDVSRMWE IVDKYHVSKF YTAPTAIRLL MKYGSDPVHK YKRTSLKILG
160 170 180 190 200
TVGEPINPEA WQWYYNVVGE KRCPVVDTFW QTETGGHVMT PLPAATPMKP
210 220 230 240 250
GSATFPFFGV VPAILNESGE ELEGPSEGYL VFKQPWPGVM RTVYGNHLRF
260 270 280 290 300
ETTYFKKFPG YYVTGDGCRR DKDGYYWITG RIDDMLNVSG HLLSTAEVES
310 320 330 340 350
ALVEHEAVAE AAVVGRPHPV KGESLYCFVT LNDGINYNQK LEAELKKQVR
360 370 380 390 400
EKIGAIATPD YIQNAPGLPK TRSGKIMRRV LRKIACNERD LGDVSTLADS
410
SVIEHLFENR CYTAV
Length:415
Mass (Da):46,450
Last modified:August 16, 2004 - v1
Checksum:i29A03AB1D3B2A0E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT027560 Genomic DNA. No translation available.
CU137717 Genomic DNA. No translation available.
BC075933 mRNA. Translation: AAH75933.1.
RefSeqiNP_001002641.1. NM_001002641.1.
UniGeneiDr.75329.

Genome annotation databases

EnsembliENSDART00000055054; ENSDARP00000055053; ENSDARG00000037781.
GeneIDi436914.
KEGGidre:436914.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT027560 Genomic DNA. No translation available.
CU137717 Genomic DNA. No translation available.
BC075933 mRNA. Translation: AAH75933.1.
RefSeqiNP_001002641.1. NM_001002641.1.
UniGeneiDr.75329.

3D structure databases

ProteinModelPortaliQ6DHN4.
SMRiQ6DHN4. Positions 3-410.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000055053.

Proteomic databases

PRIDEiQ6DHN4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000055054; ENSDARP00000055053; ENSDARG00000037781.
GeneIDi436914.
KEGGidre:436914.

Organism-specific databases

CTDi55902.
ZFINiZDB-GENE-040718-388. acss2.

Phylogenomic databases

eggNOGiCOG0365.
GeneTreeiENSGT00760000119178.
HOGENOMiHOG000229981.
HOVERGENiHBG014401.
KOiK01895.
PhylomeDBiQ6DHN4.

Enzyme and pathway databases

ReactomeiREACT_352225. Ethanol oxidation.

Miscellaneous databases

NextBioi20831341.

Gene expression databases

BgeeiQ6DHN4.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: WholeImported.
  2. Ensembl
    Submitted (JAN-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  3. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ6DHN4_DANRE
AccessioniPrimary (citable) accession number: Q6DHN4
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: April 1, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.