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Protein

Leucine-rich repeat-containing protein 57

Gene

lrrc57

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 57
Gene namesi
Name:lrrc57
ORF Names:zgc:92240
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 17

Organism-specific databases

ZFINiZDB-GENE-040718-372 lrrc57

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002277811 – 238Leucine-rich repeat-containing protein 57Add BLAST238

Proteomic databases

PaxDbiQ6DHL5
PRIDEiQ6DHL5

Expressioni

Gene expression databases

BgeeiENSDARG00000043938
ExpressionAtlasiQ6DHL5 baseline

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000064514

Structurei

3D structure databases

ProteinModelPortaliQ6DHL5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati10 – 36LRR 1Add BLAST27
Repeati37 – 62LRR 2Add BLAST26
Repeati64 – 82LRR 3Add BLAST19
Repeati83 – 106LRR 4Add BLAST24
Repeati108 – 128LRR 5Add BLAST21
Repeati129 – 152LRR 6Add BLAST24
Repeati154 – 173LRR 7Add BLAST20
Repeati174 – 199LRR 8Add BLAST26

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG0619 Eukaryota
COG4886 LUCA
GeneTreeiENSGT00900000140805
HOGENOMiHOG000116557
HOVERGENiHBG054710
InParanoidiQ6DHL5
OrthoDBiEOG091G08V6
PhylomeDBiQ6DHL5
TreeFamiTF326481

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
PfamiView protein in Pfam
PF13855 LRR_8, 1 hit
SMARTiView protein in SMART
SM00369 LRR_TYP, 5 hits
PROSITEiView protein in PROSITE
PS51450 LRR, 7 hits

Sequencei

Sequence statusi: Complete.

Q6DHL5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNSALKAHL ETSQKTGVFQ LTGKGLTEFP EDLQKLTANL RTVDLSNNKI
60 70 80 90 100
EELPAFIGSF QHLKSFTISC NKLTSLPNDI GKLKKLETLI LNGNQLKQLP
110 120 130 140 150
SSIGQLKSLR TLSLSGNQFK EFPSGLGTLR QLDVLDLSKN QIRVVPAEVA
160 170 180 190 200
ELQAIEINLN QNQISSVTQE VSRTPRLKVL RLEENCLELS SIPLSILTDS
210 220 230
QVSLLSVEGN LFEVKKMRDL EGYDKYMERF TATKKKFA
Length:238
Mass (Da):26,519
Last modified:August 16, 2004 - v1
Checksum:i911BAE3F867CFAA8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC075955 mRNA Translation: AAH75955.1
RefSeqiNP_001002627.1, NM_001002627.1
UniGeneiDr.84455

Genome annotation databases

EnsembliENSDART00000064515; ENSDARP00000064514; ENSDARG00000043938
GeneIDi436900
KEGGidre:436900

Similar proteinsi

Entry informationi

Entry nameiLRC57_DANRE
AccessioniPrimary (citable) accession number: Q6DHL5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: August 16, 2004
Last modified: March 28, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health