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Protein

Solute carrier family 25 member 40

Gene

slc25a40

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Solute carrier family 25 member 40
Gene namesi
ORF Names:zgc:92520
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 16

Organism-specific databases

ZFINiZDB-GENE-040718-52. slc25a40.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4021Helical; Name=1Sequence analysisAdd
BLAST
Transmembranei104 – 12421Helical; Name=2Sequence analysisAdd
BLAST
Transmembranei143 – 16321Helical; Name=3Sequence analysisAdd
BLAST
Transmembranei200 – 22122Helical; Name=4Sequence analysisAdd
BLAST
Transmembranei237 – 25721Helical; Name=5Sequence analysisAdd
BLAST
Transmembranei299 – 31921Helical; Name=6Sequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 353353Solute carrier family 25 member 40PRO_0000291812Add
BLAST

Proteomic databases

PaxDbiQ6DHC3.

Expressioni

Gene expression databases

BgeeiENSDARG00000015856.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000011600.

Structurei

3D structure databases

ProteinModelPortaliQ6DHC3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati14 – 132119Solcar 1Add
BLAST
Repeati140 – 22485Solcar 2Add
BLAST
Repeati234 – 32895Solcar 3Add
BLAST

Sequence similaritiesi

Contains 3 Solcar repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0761. Eukaryota.
ENOG410XQVP. LUCA.
GeneTreeiENSGT00790000123051.
HOGENOMiHOG000214473.
HOVERGENiHBG011439.
InParanoidiQ6DHC3.
KOiK15119.
OMAiMMSIPAN.
OrthoDBiEOG091G07QQ.
PhylomeDBiQ6DHC3.
TreeFamiTF314720.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiIPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 2 hits.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6DHC3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCQESSPGP PGDITPFQQM MASCSGAIIT SLLVTPLDVV KIRLQAQKNP
60 70 80 90 100
FPKGKCFVYC NGLMDHICVC ENGNTKVWYK APGHFSGTLD AFLKIIRMEG
110 120 130 140 150
IRSLWSGLPP TLIMAVPATV IYFTCYDQLF ALLKLKMGDR SDLAPLFAGA
160 170 180 190 200
IARVGSATVI SPLELIRTKM QSEKQSYREM SAVIRSALKN EGLRSLWRGW
210 220 230 240 250
GPTLLRDVPF SAMYWFNYEK GKWWLCKRYS CSEPTVAITF TAGALSGSIA
260 270 280 290 300
SIITLPFDVV KTKRQVEMGE LQTMKLSTQV SSSTCSVMKR IVAENGVSGL
310 320 330 340 350
FAGFMPRLIK VAPACAIMIS TYEFGKAFFR KYNHQKEGQA TASQHIISHT

EKH
Length:353
Mass (Da):39,100
Last modified:August 16, 2004 - v1
Checksum:iDFB1DC68A378B10C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC076052 mRNA. Translation: AAH76052.1.
RefSeqiNP_001002360.1. NM_001002360.1.
XP_005158327.1. XM_005158270.2.
UniGeneiDr.79317.

Genome annotation databases

EnsembliENSDART00000021145; ENSDARP00000011600; ENSDARG00000015856.
GeneIDi436633.
KEGGidre:436633.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC076052 mRNA. Translation: AAH76052.1.
RefSeqiNP_001002360.1. NM_001002360.1.
XP_005158327.1. XM_005158270.2.
UniGeneiDr.79317.

3D structure databases

ProteinModelPortaliQ6DHC3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000011600.

Proteomic databases

PaxDbiQ6DHC3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000021145; ENSDARP00000011600; ENSDARG00000015856.
GeneIDi436633.
KEGGidre:436633.

Organism-specific databases

CTDi55972.
ZFINiZDB-GENE-040718-52. slc25a40.

Phylogenomic databases

eggNOGiKOG0761. Eukaryota.
ENOG410XQVP. LUCA.
GeneTreeiENSGT00790000123051.
HOGENOMiHOG000214473.
HOVERGENiHBG011439.
InParanoidiQ6DHC3.
KOiK15119.
OMAiMMSIPAN.
OrthoDBiEOG091G07QQ.
PhylomeDBiQ6DHC3.
TreeFamiTF314720.

Miscellaneous databases

PROiQ6DHC3.

Gene expression databases

BgeeiENSDARG00000015856.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiIPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
PRINTSiPR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 2 hits.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiS2540_DANRE
AccessioniPrimary (citable) accession number: Q6DHC3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: August 16, 2004
Last modified: September 7, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.