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Protein
Submitted name:

Trafficking protein particle complex 5

Gene

trappc5

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-DRE-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.

Names & Taxonomyi

Protein namesi
Submitted name:
Trafficking protein particle complex 5Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:trappc5Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 1

Organism-specific databases

ZFINiZDB-GENE-040718-185. trappc5.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000039210.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2J3RX-ray2.60B20-176[»]
2J3WX-ray2.10B/F1-188[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3315. Eukaryota.
COG5128. LUCA.
GeneTreeiENSGT00390000000976.
HOGENOMiHOG000176758.
HOVERGENiHBG055535.
OMAiGKTIYHR.
OrthoDBiEOG7JT6XK.
TreeFamiTF313795.

Family and domain databases

InterProiIPR024096. NO_sig/Golgi_transp_ligand-bd.
IPR016696. TRAPP-I_su5.
IPR007194. TRAPP_component.
[Graphical view]
PANTHERiPTHR20902. PTHR20902. 1 hit.
PfamiPF04051. TRAPP. 1 hit.
[Graphical view]
PIRSFiPIRSF017479. TRAPP_I_complex_Trs31. 1 hit.
SUPFAMiSSF111126. SSF111126. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6DGL5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEVRFTRGKS AILERSLTRP KTEVSVSAFA LLFSEMVQYC QSRVYSVSEL
60 70 80 90 100
QARLADMGQG VGASLLDVLV MREKNGKRET KVLNILLFIK VNVWKALFGK
110 120 130 140 150
EADKLEQAND DDKTYYIIEK EPLINAYISV PKENSTLNCA AFTGGIVEAI
160 170 180
LTHSGFPAKV TVHWHKGTTL MIKFDESVIA RDKALDGR
Length:188
Mass (Da):21,030
Last modified:August 16, 2004 - v1
Checksum:iCAA29F4B9556DD4E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX511120 Genomic DNA. No translation available.
BC076327 mRNA. Translation: AAH76327.1.
RefSeqiNP_001002482.1. NM_001002482.1.
XP_005160093.1. XM_005160036.2.
UniGeneiDr.76532.

Genome annotation databases

EnsembliENSDART00000038574; ENSDARP00000039210; ENSDARG00000026068.
ENSDART00000141144; ENSDARP00000122338; ENSDARG00000026068.
ENSDART00000149565; ENSDARP00000123691; ENSDARG00000026068.
GeneIDi436755.
KEGGidre:436755.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX511120 Genomic DNA. No translation available.
BC076327 mRNA. Translation: AAH76327.1.
RefSeqiNP_001002482.1. NM_001002482.1.
XP_005160093.1. XM_005160036.2.
UniGeneiDr.76532.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2J3RX-ray2.60B20-176[»]
2J3WX-ray2.10B/F1-188[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000039210.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000038574; ENSDARP00000039210; ENSDARG00000026068.
ENSDART00000141144; ENSDARP00000122338; ENSDARG00000026068.
ENSDART00000149565; ENSDARP00000123691; ENSDARG00000026068.
GeneIDi436755.
KEGGidre:436755.

Organism-specific databases

CTDi126003.
ZFINiZDB-GENE-040718-185. trappc5.

Phylogenomic databases

eggNOGiKOG3315. Eukaryota.
COG5128. LUCA.
GeneTreeiENSGT00390000000976.
HOGENOMiHOG000176758.
HOVERGENiHBG055535.
OMAiGKTIYHR.
OrthoDBiEOG7JT6XK.
TreeFamiTF313795.

Enzyme and pathway databases

ReactomeiR-DRE-204005. COPII (Coat Protein 2) Mediated Vesicle Transport.

Miscellaneous databases

NextBioi20831192.

Family and domain databases

InterProiIPR024096. NO_sig/Golgi_transp_ligand-bd.
IPR016696. TRAPP-I_su5.
IPR007194. TRAPP_component.
[Graphical view]
PANTHERiPTHR20902. PTHR20902. 1 hit.
PfamiPF04051. TRAPP. 1 hit.
[Graphical view]
PIRSFiPIRSF017479. TRAPP_I_complex_Trs31. 1 hit.
SUPFAMiSSF111126. SSF111126. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  2. "The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering."
    Kim Y.G., Raunser S., Munger C., Wagner J., Song Y.L., Cygler M., Walz T., Oh B.H., Sacher M.
    Cell 127:817-830(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS).
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  4. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ6DGL5_DANRE
AccessioniPrimary (citable) accession number: Q6DGL5
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: May 11, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.