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Q6DGI1

- Q6DGI1_DANRE

UniProt

Q6DGI1 - Q6DGI1_DANRE

Protein
Submitted name:

Uncharacterized protein

Gene

zgc:92912

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Biological processi

    1. vesicle-mediated transport Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Submitted name:
    Zgc:92912Imported
    Submitted name:
    Zgc:92912 proteinImported
    Gene namesi
    ORF Names:zgc:92912Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 16

    Organism-specific databases

    ZFINiZDB-GENE-040718-265. zgc:92912.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: InterPro

    Keywords - Cellular componenti

    MembraneSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000034557.

    Family & Domainsi

    Sequence similaritiesi

    Contains v-SNARE coiled-coil homology domain.SAAS annotation

    Keywords - Domaini

    Coiled coilSAAS annotation

    Phylogenomic databases

    eggNOGiCOG5143.
    GeneTreeiENSGT00550000074449.
    HOVERGENiHBG006675.
    InParanoidiQ6DGI1.
    KOiK08510.

    Family and domain databases

    InterProiIPR001388. Synaptobrevin.
    IPR016444. Synaptobrevin/VAMP_met/fun.
    [Graphical view]
    PfamiPF00957. Synaptobrevin. 1 hit.
    [Graphical view]
    PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
    PRINTSiPR00219. SYNAPTOBREVN.
    PROSITEiPS00417. SYNAPTOBREVIN. 1 hit.
    PS50892. V_SNARE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6DGI1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSAADDANPA GAPGGPGGAG APAPPPNTTS NRRLQQTQAQ VEEVVDIMRV    50
    NVDKVLERDQ KLSELDDRAD ALQAGASQFE SCAAKLKNKY WWKNCKMMII 100
    MGVIGVLFVG IIFLYFFS 118
    Length:118
    Mass (Da):12,760
    Last modified:August 16, 2004 - v1
    Checksum:i31D5C120E91DF14C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU104697 Genomic DNA. No translation available.
    BC076364 mRNA. Translation: AAH76364.1.
    BC165163 mRNA. Translation: AAI65163.1.
    RefSeqiNP_001002532.1. NM_001002532.1.
    UniGeneiDr.88019.

    Genome annotation databases

    EnsembliENSDART00000154253; ENSDARP00000129602; ENSDARG00000097576.
    GeneIDi436805.
    KEGGidre:436805.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU104697 Genomic DNA. No translation available.
    BC076364 mRNA. Translation: AAH76364.1 .
    BC165163 mRNA. Translation: AAI65163.1 .
    RefSeqi NP_001002532.1. NM_001002532.1.
    UniGenei Dr.88019.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000034557.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000154253 ; ENSDARP00000129602 ; ENSDARG00000097576 .
    GeneIDi 436805.
    KEGGi dre:436805.

    Organism-specific databases

    ZFINi ZDB-GENE-040718-265. zgc:92912.

    Phylogenomic databases

    eggNOGi COG5143.
    GeneTreei ENSGT00550000074449.
    HOVERGENi HBG006675.
    InParanoidi Q6DGI1.
    KOi K08510.

    Miscellaneous databases

    NextBioi 20831237.

    Family and domain databases

    InterProi IPR001388. Synaptobrevin.
    IPR016444. Synaptobrevin/VAMP_met/fun.
    [Graphical view ]
    Pfami PF00957. Synaptobrevin. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF005409. Synaptobrevin_euk. 1 hit.
    PRINTSi PR00219. SYNAPTOBREVN.
    PROSITEi PS00417. SYNAPTOBREVIN. 1 hit.
    PS50892. V_SNARE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: BrainImported.
    2. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: PCR rescueImported.
    3. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.
    4. Ensembl
      Submitted (MAR-2014) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiQ6DGI1_DANRE
    AccessioniPrimary (citable) accession number: Q6DGI1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 16, 2004
    Last sequence update: August 16, 2004
    Last modified: October 1, 2014
    This is version 70 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3