Reviewed, UniProtKB/Swiss-Prot Q6D4W6 (ARAB_ERWCT)

Names and origin

Protein names

Recommended name:
    Ribulokinase
    EC=2.7.1.16

Gene names

Name:	araB
Ordered Locus Names:	ECA2274

Organism

Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum) [Complete proteome] [HAMAP]

Taxonomic identifier

29471 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium

Protein attributes

Sequence length	561 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520
Sequence similarities	Belongs to the ribulokinase family.

Ontologies

Keywords
Biological process	Arabinose catabolism Carbohydrate metabolism
Ligand	ATP-binding Nucleotide-binding
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 561	561	Ribulokinase HAMAP MF_00520		PRO_0000198361

Sequences

	Sequence		Length	Mass (Da)
	Q6D4W6-1 [UniParc]. Last modified August 16, 2004. Version 1. Checksum: 8BF01B329D8CC712	FASTA	561	61,379
	10 20 30 40 50 60 MSAGAITIGL DFGSDSVRAL AVDCQSGKEL ETDVVYYPRW REGKYCQPAN NQFRHHPLDY 70 80 90 100 110 120 IESLEQAIKV VVSRLTNDQR QSIIGIGVDS TGSTPAPIDE QGQILALRPE FANNPNAMFV 130 140 150 160 170 180 LWKDHTAIEE ADAINALCRS GQFPDYTRYI GGVYSSEWFW AKILHVSRED AAVRQAAVSW 190 200 210 220 230 240 IELCDWVPAL LSGTQAPADI RRGRCSAGHK SLWHPSWCGL PPKDFLHALD PCLTETLQYP 250 260 270 280 290 300 LFTDTWTAEQ PVGSITAEWA QRLGIPETVT LAGGAFDCHV GTVGAGAQPY TLVKVIGTST 310 320 330 340 350 360 CDILIADEER IADRTIAGIC GQVDGSVVPN YIGLEAGQSA FGDMYAWFGR LLGWSLQEAA 370 380 390 400 410 420 KDHPELKTSL QAMEAKLLER LTHNWAENPT LDHLPIVLDW FNGRRTPFAN QRLKGVITDL 430 440 450 460 470 480 NLGTDAPTLF GGFIAATAFG ARAIMECFEE QGVPVENVLA LGGIARKSPV IMQVCTDVMN 490 500 510 520 530 540 RPLQIVASDQ CCALGAAIFA AVAAGVHGDI PTAQQHMASG IERTLMPDSQ RVARYQQLYE 550 560 RYQQWCRLAE PAYSPTSTAK N

References

[1]

"Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors." Bell K.S., Sebaihia M., Pritchard L., Holden M.T.G., Hyman L.J., Holeva M.C., Thomson N.R., Bentley S.D., Churcher L.J.C., Mungall K., Atkin R., Bason N., Brooks K., Chillingworth T., Clark K., Doggett J., Fraser A., Hance Z. , Hauser H., Jagels K., Moule S., Norbertczak H., Ormond D., Price C., Quail M.A., Sanders M., Walker D., Whitehead S., Salmond G.P.C., Birch P.R.J., Parkhill J., Toth I.K. Proc. Natl. Acad. Sci. U.S.A. 101:11105-11110(2004) [PubMed: 15263089] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SCRI 1043 / ATCC BAA-672.

Cross-references

Sequence databases
EMBLGenBankDDBJ	BX950851 Genomic DNA. Translation: CAG75177.1.
RefSeq	YP_050369.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	2884165.
GenomeReviews	Gene locus ECA2274 in contig BX950851_GR.
KEGG	eca:ECA2274.
NMPDR	fig|218491.3.peg.1789.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q6D4W6.
OMA	NGRRTPD.
Enzyme and pathway databases
BioCyc	ECAR218491:ECA2274-MON.
BRENDA	2.7.1.16. 281579.
Family and domain databases
HAMAP	MF_00520. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

ARAB_ERWCT

Accession

Primary (citable) accession number: Q6D4W6

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 1, 2005
Last sequence update:	August 16, 2004
Last modified:	November 3, 2009
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)