Reviewed,
UniProtKB/Swiss-Prot Q6D4W5 (ARAA_ERWCT)
Last modified
November 3, 2009.
Version 29.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
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Names and origin
| Protein names | Recommended name: L-arabinose isomerase EC=5.3.1.4 | ||||
| Gene names |
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| Organism | Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 29471 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pectobacterium |
Protein attributes
| Sequence length | 501 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Function | Catalyzes the conversion of L-arabinose to L-ribulose By similarity. |
| Catalytic activity | L-arabinose = L-ribulose. HAMAP MF_00519 |
| Cofactor | Binds 1 manganese ion per subunit By similarity. |
| Pathway | Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP MF_00519 |
| Subunit structure | Homohexamer By similarity. |
| Sequence similarities | Belongs to the arabinose isomerase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Arabinose catabolism Carbohydrate metabolism |
| Ligand | Manganese Metal-binding |
| Molecular function | Isomerase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | arabinose catabolic process Inferred from electronic annotation. Source: HAMAP |
| Molecular function | L-arabinose isomerase activity Inferred from electronic annotation. Source: HAMAP manganese ion bindingInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 501 | 501 | L-arabinose isomerase HAMAP MF_00519 | PRO_0000198388 | |||||
Sites | |||||||||
| Metal binding | 306 | 1 | Manganese By similarity | ||||||
| Metal binding | 333 | 1 | Manganese By similarity | ||||||
| Metal binding | 350 | 1 | Manganese By similarity | ||||||
| Metal binding | 450 | 1 | Manganese By similarity | ||||||
Sequences
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References
| [1] | "Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors." Bell K.S., Sebaihia M., Pritchard L., Holden M.T.G., Hyman L.J., Holeva M.C., Thomson N.R., Bentley S.D., Churcher L.J.C., Mungall K., Atkin R., Bason N., Brooks K., Chillingworth T., Clark K., Doggett J., Fraser A., Hance Z. Toth I.K.Proc. Natl. Acad. Sci. U.S.A. 101:11105-11110(2004) [PubMed: 15263089] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SCRI 1043 / ATCC BAA-672. |
Cross-references
Sequence databases | |
|---|---|
| BX950851 Genomic DNA. Translation: CAG75178.1. | |
| RefSeq | YP_050370.1. |
3D structure databases | |
| SMR | Q6D4W5. Positions 1-496. |
| ModBase | Search... |
Genome annotation databases | |
| GeneID | 2884164. |
| GenomeReviews | Gene locus ECA2275 in contig BX950851_GR. |
| KEGG | eca:ECA2275. |
| NMPDR | fig|218491.3.peg.1790. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| HOGENOM | Q6D4W5. |
| OMA | EVCPTIA. |
Enzyme and pathway databases | |
| BioCyc | ECAR218491:ECA2275-MON. |
| BRENDA | 5.3.1.4. 281579. |
Family and domain databases | |
| HAMAP | MF_00519. [Tree] |
| InterPro | IPR003762. Lara_isomerase. [Graphical view] |
| Pfam | PF02610. Arabinose_Isome. 1 hit. [Graphical view] |
| PIRSF | PIRSF001478. L-ara_isomerase. 1 hit. |
| ProDom | PD018364. Lara_isomerase. 1 hit. [Graphical view] [Entries sharing at least one domain] |
| ProtoNet | Search... |
Entry information
| Entry name | ARAA_ERWCT | ||||||||
| Accession | Primary (citable) accession number: Q6D4W5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with


