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Protein

30S ribosomal protein S18

Gene

rpsR

Organism
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciPATR218491:GJNB-3685-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S18UniRule annotation
Gene namesi
Name:rpsRUniRule annotation
Ordered Locus Names:ECA3611
OrganismiPectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
Taxonomic identifieri218491 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
Proteomesi
  • UP000007966 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 757530S ribosomal protein S18PRO_0000111157Add
BLAST

Proteomic databases

PRIDEiQ6D137.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.UniRule annotation

Protein-protein interaction databases

STRINGi218491.ECA3611.

Structurei

3D structure databases

ProteinModelPortaliQ6D137.
SMRiQ6D137. Positions 20-74.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S18P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VH8. Bacteria.
COG0238. LUCA.
HOGENOMiHOG000218466.
KOiK02963.
OMAiYKRPDIL.
OrthoDBiPOG091H02JS.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18. 1 hit.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6D137-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARYFRRRKF CRFTAEGVVE IDYKDIATLK NYITESGKIV PSRITGTRAK
60 70
YQRQLARAIK RARYLSLLPY TDRHQ
Length:75
Mass (Da):8,957
Last modified:August 16, 2004 - v1
Checksum:iAC29828F971B73B8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950851 Genomic DNA. Translation: CAG76509.1.
RefSeqiWP_005974788.1. NC_004547.2.

Genome annotation databases

EnsemblBacteriaiCAG76509; CAG76509; ECA3611.
GeneIDi2884462.
KEGGieca:ECA3611.
PATRICi20482621. VBIPecAtr54885_3664.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950851 Genomic DNA. Translation: CAG76509.1.
RefSeqiWP_005974788.1. NC_004547.2.

3D structure databases

ProteinModelPortaliQ6D137.
SMRiQ6D137. Positions 20-74.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi218491.ECA3611.

Proteomic databases

PRIDEiQ6D137.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAG76509; CAG76509; ECA3611.
GeneIDi2884462.
KEGGieca:ECA3611.
PATRICi20482621. VBIPecAtr54885_3664.

Phylogenomic databases

eggNOGiENOG4105VH8. Bacteria.
COG0238. LUCA.
HOGENOMiHOG000218466.
KOiK02963.
OMAiYKRPDIL.
OrthoDBiPOG091H02JS.

Enzyme and pathway databases

BioCyciPATR218491:GJNB-3685-MONOMER.

Family and domain databases

Gene3Di4.10.640.10. 1 hit.
HAMAPiMF_00270. Ribosomal_S18. 1 hit.
InterProiIPR001648. Ribosomal_S18.
IPR018275. Ribosomal_S18_CS.
[Graphical view]
PfamiPF01084. Ribosomal_S18. 1 hit.
[Graphical view]
PRINTSiPR00974. RIBOSOMALS18.
ProDomiPD002239. Ribosomal_S18. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46911. SSF46911. 1 hit.
TIGRFAMsiTIGR00165. S18. 1 hit.
PROSITEiPS00057. RIBOSOMAL_S18. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS18_PECAS
AccessioniPrimary (citable) accession number: Q6D137
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: August 16, 2004
Last modified: September 7, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.