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Protein
Submitted name:

Nitrite reductase [NAD(P)H] small subunit

Gene

nirD

Organism
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseImported

Enzyme and pathway databases

BioCyciPATR218491:GJNB-4164-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Nitrite reductase [NAD(P)H] small subunitImported (EC:1.7.1.4Imported)
Gene namesi
Name:nirDImported
Ordered Locus Names:ECA4080Imported
OrganismiPectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica)Imported
Taxonomic identifieri218491 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePectobacterium
Proteomesi
  • UP000007966 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi218491.ECA4080.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JZANMR-A1-122[»]
ProteinModelPortaliQ6CZS1.
SMRiQ6CZS1. Positions 1-122.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ6CZS1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 108108NIRDInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105WZK. Bacteria.
COG2146. LUCA.
HOGENOMiHOG000128543.
KOiK00363.
OMAiRDGLCME.
OrthoDBiEOG6PP9RC.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
PfamiPF13806. Rieske_2. 1 hit.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6CZS1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQWTTVCKL DDILPGTGVC ALVEQQQIAV FRPRNDEQVY AISNIDPFAQ
60 70 80 90 100
ASVLSRGIVA EHQDDLWVAS PLKKQHFRLY DGFCLEDGAY SVAAYDTQVT
110 120
NGNVQISIAD SDVAVDNSQP LP
Length:122
Mass (Da):13,400
Last modified:August 16, 2004 - v1
Checksum:i0A838C046CB70B00
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950851 Genomic DNA. Translation: CAG76977.1.
RefSeqiWP_011095554.1. NC_004547.2.

Genome annotation databases

EnsemblBacteriaiCAG76977; CAG76977; ECA4080.
GeneIDi2881281.
KEGGieca:ECA4080.
PATRICi20483607. VBIPecAtr54885_4149.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX950851 Genomic DNA. Translation: CAG76977.1.
RefSeqiWP_011095554.1. NC_004547.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JZANMR-A1-122[»]
ProteinModelPortaliQ6CZS1.
SMRiQ6CZS1. Positions 1-122.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi218491.ECA4080.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAG76977; CAG76977; ECA4080.
GeneIDi2881281.
KEGGieca:ECA4080.
PATRICi20483607. VBIPecAtr54885_4149.

Phylogenomic databases

eggNOGiENOG4105WZK. Bacteria.
COG2146. LUCA.
HOGENOMiHOG000128543.
KOiK00363.
OMAiRDGLCME.
OrthoDBiEOG6PP9RC.

Enzyme and pathway databases

BioCyciPATR218491:GJNB-4164-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ6CZS1.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
PfamiPF13806. Rieske_2. 1 hit.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SCRI 1043 / ATCC BAA-672Imported.
  2. "Solution NMR structure of nitrite reductase [NAD(P)H] small subunit from Erwinia carotovora."
    Sathyamoorthy B., Eletsky A., Wang D., Stokes K., Owens L., Xiao R., Liu J., Baran M.C., Swapna G.V.T., Acton T.B., Rost B., Montelione G.T., Szyperski T.
    Submitted (DEC-2007) to the PDB data bank
    Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiQ6CZS1_PECAS
AccessioniPrimary (citable) accession number: Q6CZS1
Entry historyi
Integrated into UniProtKB/TrEMBL: August 16, 2004
Last sequence update: August 16, 2004
Last modified: March 16, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.