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Protein

Mitochondrial group I intron splicing factor CCM1

Gene

CCM1

Organism
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

RNA-binding protein involved in the specific removal of group I introns in mitochondrial encoded transcripts. Maintains the stability of the small subunit mitochondrial 15S rRNA and thus the expression of the mitochondrial genome (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

mRNA processing, mRNA splicing

Names & Taxonomyi

Protein namesi
Recommended name:
Mitochondrial group I intron splicing factor CCM1
Gene namesi
Name:CCM1
Ordered Locus Names:KLLA0E10803g
OrganismiKluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
Taxonomic identifieri284590 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeKluyveromyces
Proteomesi
  • UP000000598 Componenti: Chromosome E

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 2525MitochondrionSequence analysisAdd
BLAST
Chaini26 – 853828Mitochondrial group I intron splicing factor CCM1PRO_0000402263Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi284590.XP_454437.1.

Structurei

3D structure databases

ProteinModelPortaliQ6CNQ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati310 – 34435PPR 1Add
BLAST
Repeati347 – 38135PPR 2Add
BLAST

Sequence similaritiesi

Belongs to the CCM1 family.Curated
Contains 2 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiENOG410IFHG. Eukaryota.
ENOG410Y8VV. LUCA.
HOGENOMiHOG000141846.
InParanoidiQ6CNQ2.
OMAiTFDTMKF.
OrthoDBiEOG7JT75F.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
[Graphical view]
PROSITEiPS51375. PPR. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q6CNQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSLGKNGKT SSTLVRNARR SVIMPASRDV RSRKRRARSV TDTKDVLDLD
60 70 80 90 100
SIDFTNEKEV QFKVNQLKEF TRNLREQIKY TDELKRKHVI EEEETKSVDP
110 120 130 140 150
EMHDFDSDAG VILSSLNDKV AGPGAEQNLS TLLLSDKADT SLLPERLSER
160 170 180 190 200
IKDKDLILRC LFDKRNRDFN PIVTELYHSE QRLKGLGIQF IYSKILSKFD
210 220 230 240 250
KLSFTSLSQL DEMIMESVGN DSSRLNGNLY EHLMLSFSRV TSPSAQGKLE
260 270 280 290 300
VCGKLRELTE RMDATLSKKS FQPTQYMLNA CIFAASKAMS WEYMDFFLKK
310 320 330 340 350
FTSTYDMQPN RKNYTTVISF YTKMEHYKKA WQLFDSLKFL SLEHKPDTKV
360 370 380 390 400
YNLMLEVCQK EKNYARSLDI FQEMDDLNVT KDLKTYLNAA KSLALSSADN
410 420 430 440 450
VTSEGKADSL RLMSWKYIHK IHDDPKLSKQ LTENPRNNML LLETMMVLSA
460 470 480 490 500
YDGDVGFARA LYYKYTNALF KAHFYEFKKY HKDTDPVDYI RIWKKSLSAQ
510 520 530 540 550
MFNWLMLSYS KFKKSRLPVL LGYPEGSSLR RSMIYSVDYS GRDSSYENSN
560 570 580 590 600
IQLPMLPMTE LNDAELTINE SKALWRFNLE FGGNYDIREL PEGMQTVKDI
610 620 630 640 650
ENIVKCAKTV NEFKLQISQR LLEWKNRYVN HKILNMKSLI TFLTIPIRLH
660 670 680 690 700
EPNEFKLRLQ EFTFQAFEFN ERVEYQFKKS KTNELESPVL SKDFNTTDSN
710 720 730 740 750
ALVDNGIIPS EFLLYLVSMK HKLATNCAIY EVSMKAAIAF HDYELAMTTW
760 770 780 790 800
KNRGKFRMTD AFQKLTPGER QQSDATFAQL MVEYFTNEKM YQDALSIILS
810 820 830 840 850
SLKTVNWQYS MVKSLHRALL AIEDENSAAR LLSVVNRKSK IVELEEEIKS

LDL
Length:853
Mass (Da):99,225
Last modified:August 16, 2004 - v1
Checksum:iC78128147DCA1C06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR382125 Genomic DNA. Translation: CAG99524.1.
RefSeqiXP_454437.1. XM_454437.1.

Genome annotation databases

EnsemblFungiiCAG99524; CAG99524; KLLA0_E10803g.
GeneIDi2893680.
KEGGikla:KLLA0E10803g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR382125 Genomic DNA. Translation: CAG99524.1.
RefSeqiXP_454437.1. XM_454437.1.

3D structure databases

ProteinModelPortaliQ6CNQ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi284590.XP_454437.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCAG99524; CAG99524; KLLA0_E10803g.
GeneIDi2893680.
KEGGikla:KLLA0E10803g.

Phylogenomic databases

eggNOGiENOG410IFHG. Eukaryota.
ENOG410Y8VV. LUCA.
HOGENOMiHOG000141846.
InParanoidiQ6CNQ2.
OMAiTFDTMKF.
OrthoDBiEOG7JT75F.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 2 hits.
[Graphical view]
PROSITEiPS51375. PPR. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCCM1_KLULA
AccessioniPrimary (citable) accession number: Q6CNQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: August 16, 2004
Last modified: June 8, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.