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Protein

U3 small nucleolar ribonucleoprotein protein IMP4

Gene

IMP4

Organism
Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein
Biological processRibosome biogenesis, rRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
U3 small nucleolar ribonucleoprotein protein IMP4
Short name:
U3 snoRNP protein IMP4
Gene namesi
Name:IMP4
Ordered Locus Names:YALI0D23859g
OrganismiYarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
Taxonomic identifieri284591 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesDipodascaceaeYarrowia
Proteomesi
  • UP000001300 Componenti: Chromosome D

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001202441 – 283U3 small nucleolar ribonucleoprotein protein IMP4Add BLAST283

Proteomic databases

PRIDEiQ6C804

Interactioni

Subunit structurei

Component of a heterotrimeric complex containing IMP3, IMP4 and MPP10.By similarity

Protein-protein interaction databases

STRINGi4952.XP_503208.1

Structurei

3D structure databases

ProteinModelPortaliQ6C804
SMRiQ6C804
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini79 – 260BrixPROSITE-ProRule annotationAdd BLAST182

Phylogenomic databases

HOGENOMiHOG000172063
InParanoidiQ6C804
KOiK14561
OMAiFFNISDV
OrthoDBiEOG092C3ODK

Family and domain databases

InterProiView protein in InterPro
IPR007109 Brix
PfamiView protein in Pfam
PF04427 Brix, 1 hit
SMARTiView protein in SMART
SM00879 Brix, 1 hit
PROSITEiView protein in PROSITE
PS50833 BRIX, 1 hit

Sequencei

Sequence statusi: Complete.

Q6C804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRRQARERR EYLYRKSLQL QEATKIQKRQ QLKAALASGK PLPKDVADDE
60 70 80 90 100
ELRKTIAYDE SVQDEIDDEY SAMSGITDPK VVVTTSRDPS TRLSQFAKEV
110 120 130 140 150
KLLFPTSIRL NRGGTVLPSL VSACKTSASS DLIVLHEHRG VPTAMTVSHF
160 170 180 190 200
PHGPTAYFSL HNVVLRHDLP DTGNMSEVHP HLIFDNFTTD LGKRVVQILK
210 220 230 240 250
HLFPPGVKKD SARVITFANR GDFISVRQHV YVKTREGVEL AEVGPRFEMR
260 270 280
LYDLRLGTLE NKDADVEWRM HGFMRTANKK DYL
Length:283
Mass (Da):32,225
Last modified:August 16, 2004 - v1
Checksum:i9EAB02EEE1E281C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR382130 Genomic DNA Translation: CAG81408.1
RefSeqiXP_503208.1, XM_503208.1

Genome annotation databases

EnsemblFungiiCAG81408; CAG81408; YALI0_D23859g
GeneIDi2910958
KEGGiyli:YALI0D23859g

Similar proteinsi

Entry informationi

Entry nameiIMP4_YARLI
AccessioniPrimary (citable) accession number: Q6C804
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: August 16, 2004
Last modified: May 23, 2018
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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