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Protein

U3 small nucleolar ribonucleoprotein protein IMP4

Gene

IMP4

Organism
Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the U3 small nucleolar ribonucleoprotein. Required for the early cleavages at sites A0, A1 and A2 during 18S ribosomal pre-RNA processing (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
U3 small nucleolar ribonucleoprotein protein IMP4
Short name:
U3 snoRNP protein IMP4
Gene namesi
Name:IMP4
Ordered Locus Names:YALI0D23859g
OrganismiYarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
Taxonomic identifieri284591 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesDipodascaceaeYarrowia
Proteomesi
  • UP000001300 Componenti: Chromosome D

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 283283U3 small nucleolar ribonucleoprotein protein IMP4PRO_0000120244Add
BLAST

Interactioni

Subunit structurei

Component of a heterotrimeric complex containing IMP3, IMP4 and MPP10.By similarity

Structurei

3D structure databases

ProteinModelPortaliQ6C804.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini79 – 260182BrixPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 Brix domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000172063.
InParanoidiQ6C804.
KOiK14561.
OMAiRFEMKPY.
OrthoDBiEOG092C3ODK.

Family and domain databases

Gene3Di3.40.50.10480. 1 hit.
InterProiIPR004154. Anticodon-bd.
IPR007109. Brix.
[Graphical view]
PfamiPF04427. Brix. 1 hit.
[Graphical view]
SMARTiSM00879. Brix. 1 hit.
[Graphical view]
SUPFAMiSSF52954. SSF52954. 1 hit.
PROSITEiPS50833. BRIX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6C804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRRQARERR EYLYRKSLQL QEATKIQKRQ QLKAALASGK PLPKDVADDE
60 70 80 90 100
ELRKTIAYDE SVQDEIDDEY SAMSGITDPK VVVTTSRDPS TRLSQFAKEV
110 120 130 140 150
KLLFPTSIRL NRGGTVLPSL VSACKTSASS DLIVLHEHRG VPTAMTVSHF
160 170 180 190 200
PHGPTAYFSL HNVVLRHDLP DTGNMSEVHP HLIFDNFTTD LGKRVVQILK
210 220 230 240 250
HLFPPGVKKD SARVITFANR GDFISVRQHV YVKTREGVEL AEVGPRFEMR
260 270 280
LYDLRLGTLE NKDADVEWRM HGFMRTANKK DYL
Length:283
Mass (Da):32,225
Last modified:August 16, 2004 - v1
Checksum:i9EAB02EEE1E281C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR382130 Genomic DNA. Translation: CAG81408.1.
RefSeqiXP_503208.1. XM_503208.1.

Genome annotation databases

EnsemblFungiiCAG81408; CAG81408; YALI0_D23859g.
GeneIDi2910958.
KEGGiyli:YALI0D23859g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR382130 Genomic DNA. Translation: CAG81408.1.
RefSeqiXP_503208.1. XM_503208.1.

3D structure databases

ProteinModelPortaliQ6C804.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCAG81408; CAG81408; YALI0_D23859g.
GeneIDi2910958.
KEGGiyli:YALI0D23859g.

Phylogenomic databases

HOGENOMiHOG000172063.
InParanoidiQ6C804.
KOiK14561.
OMAiRFEMKPY.
OrthoDBiEOG092C3ODK.

Family and domain databases

Gene3Di3.40.50.10480. 1 hit.
InterProiIPR004154. Anticodon-bd.
IPR007109. Brix.
[Graphical view]
PfamiPF04427. Brix. 1 hit.
[Graphical view]
SMARTiSM00879. Brix. 1 hit.
[Graphical view]
SUPFAMiSSF52954. SSF52954. 1 hit.
PROSITEiPS50833. BRIX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiIMP4_YARLI
AccessioniPrimary (citable) accession number: Q6C804
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: August 16, 2004
Last modified: September 7, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.