Q6BJ88 (Q6BJ88_DEBHA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Ribosome biogenesis protein TSR3 HAMAP-Rule MF_03146

Gene names

Name:	TSR3 HAMAP-Rule MF_03146
Ordered Locus Names:	DEHA2G04290g

Organism

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (Yeast) (Torulaspora hansenii) [Complete proteome] EMBL CAG90186.2

Taxonomic identifier

284592 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Saccharomycotina › Saccharomycetes › Saccharomycetales › Debaryomycetaceae › Debaryomyces › Debaryomyces hansenii › Debaryomyces hansenii var. hansenii

Protein attributes

Sequence length	333 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Ribosome biogenesis protein required for processing 35S pre-rRNA at site D By similarity. HAMAP-Rule MF_03146
Subcellular location	Cytoplasm. Nucleus By similarity HAMAP-Rule MF_03146.
Sequence similarities	Belongs to the TSR3 family. HAMAP-Rule MF_03146

Ontologies

Keywords
Biological process	Ribosome biogenesis HAMAP-Rule MF_03146 rRNA processing HAMAP-Rule MF_03146
Cellular component	Cytoplasm HAMAP-Rule MF_03146 Nucleus HAMAP-Rule MF_03146
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	rRNA processing Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q6BJ88 [UniParc]. Last modified November 4, 2008. Version 2. Checksum: 10B9D52D47F3AB87	FASTA	333	37,711
	10 20 30 40 50 60 MAKGKNKTSE ERANKAKTSN GHKSKQHHIR KGRQENGSQS QEDGEKFPVK LAMWDFDHCD 70 80 90 100 110 120 PKRCSGKKLE RLGLIKNLRV GQKFSGIVVS PNGKGVVCPD DREIVETFGS AVVECSWARL 130 140 150 160 170 180 EEVPFNKIGG KHERLLPYLV AANPVNYGKP WRLNCVEAVA ACFAIVGHTD WAELLLSNFS 190 200 210 220 230 240 WGLTFLKINK ELIDVYSKCT DSDSVESAQK EWLVKIENEA KERKELASKE DVWMMGNVNR 250 260 270 280 290 300 ENVDDTKEDD DEDDDDDDDE EEEEDDDDDD DEEDVEYDNL GNIISKKEVK VDSLGNLIDG 310 320 330 DEDESSDESN EDESEEEIEE ELYDKLGNLI IKS

References

[1]

"Genome evolution in yeasts." Genolevures Dujon B., Sherman D., Fischer G., Durrens P., Casaregola S., Lafontaine I., de Montigny J., Marck C., Neuveglise C., Talla E., Goffard N., Frangeul L., Aigle M., Anthouard V., Babour A., Barbe V., Barnay S., Blanchin S. , Beckerich J.-M., Beyne E., Bleykasten C., Boisrame A., Boyer J., Cattolico L., Confanioleri F., de Daruvar A., Despons L., Fabre E., Fairhead C., Ferry-Dumazet H., Groppi A., Hantraye F., Hennequin C., Jauniaux N., Joyet P., Kachouri R., Kerrest A., Koszul R., Lemaire M., Lesur I., Ma L., Muller H., Nicaud J.-M., Nikolski M., Oztas S., Ozier-Kalogeropoulos O., Pellenz S., Potier S., Richard G.-F., Straub M.-L., Suleau A., Swennen D., Tekaia F., Wesolowski-Louvel M., Westhof E., Wirth B., Zeniou-Meyer M., Zivanovic Y., Bolotin-Fukuhara M., Thierry A., Bouchier C., Caudron B., Scarpelli C., Gaillardin C., Weissenbach J., Wincker P., Souciet J.-L. Nature 430:35-44(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR382139 Genomic DNA. Translation: CAG90186.2.
RefSeq	XP_461733.2. XM_461733.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	4959.Q6BJ88.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	2904606.
KEGG	dha:DEHA2G04290g.
Phylogenomic databases
HOGENOM	HOG000227039.
KO	K09140.
OMA	SSRRTKQ.
OrthoDB	EOG4FR41Q.
Family and domain databases
HAMAP	MF_01116. TSR3.
InterPro	IPR007177. DUF367. IPR022968. Rbsm_biogenesis. IPR007209. RNaseL-inhib_metal-bd_dom. [Graphical view]
PANTHER	PTHR20426. PTHR20426. 1 hit.
Pfam	PF04034. DUF367. 1 hit. PF04068. RLI. 1 hit. [Graphical view]
ProDom	PD016638. DUF367. 1 hit. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...

Entry information

Entry name

Q6BJ88_DEBHA

Accession

Primary (citable) accession number: Q6BJ88

Entry history

Integrated into UniProtKB/TrEMBL:	August 16, 2004
Last sequence update:	November 4, 2008
Last modified:	May 1, 2013
This is version 51 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)