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Protein

Uncharacterized ABC transporter ATP-binding protein YtfR

Gene

ytfR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi42 – 498ATPPROSITE-ProRule annotation

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • monosaccharide-transporting ATPase activity Source: EcoCyc

GO - Biological processi

  • galactose transport Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:YTFR-MONOMER.
ECOL316407:JW5752-MONOMER.
MetaCyc:YTFR-MONOMER.

Protein family/group databases

TCDBi3.A.1.2.25. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter ATP-binding protein YtfR
Gene namesi
Name:ytfR
Synonyms:ytfS
Ordered Locus Names:b4485, JW5752
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12518. ytfR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 500500Uncharacterized ABC transporter ATP-binding protein YtfRPRO_0000093175Add
BLAST

Proteomic databases

PaxDbiQ6BEX0.
PRIDEiQ6BEX0.

Interactioni

Protein-protein interaction databases

BioGridi4261872. 25 interactions.
DIPiDIP-48183N.
STRINGi511145.b4485.

Structurei

3D structure databases

ProteinModelPortaliQ6BEX0.
SMRiQ6BEX0. Positions 14-477.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 245236ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini259 – 497239ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105C2J. Bacteria.
COG1129. LUCA.
InParanoidiQ6BEX0.
KOiK02056.
OMAiFVGTRDT.
OrthoDBiEOG6QK4RR.
PhylomeDBiQ6BEX0.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6BEX0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTDQHQEIL RTEGLSKFFP GVKALDNVDF SLRRGEIMAL LGENGAGKST
60 70 80 90 100
LIKALTGVYH ADRGTIWLEG QAISPKNTAH AQQLGIGTVY QEVNLLPNMS
110 120 130 140 150
VADNLFIGRE PKRFGLLRRK EMEKRATELM ASYGFSLDVR EPLNRFSVAM
160 170 180 190 200
QQIVAICRAI DLSAKVLILD EPTASLDTQE VELLFDLMRQ LRDRGVSLIF
210 220 230 240 250
VTHFLDQVYQ VSDRITVLRN GSFVGCRETC ELPQIELVKM MLGRELDTHA
260 270 280 290 300
LQRAGRTLLS DKPVAAFKNY GKKGTIAPFD LEVRPGEIVG LAGLLGSGRT
310 320 330 340 350
ETAEVIFGIK PADSGTALIK GKPQNLRSPH QASVLGIGFC PEDRKTDGII
360 370 380 390 400
AAASVRENII LALQAQRGWL RPISRKEQQE IAERFIRQLG IRTPSTEQPI
410 420 430 440 450
EFLSGGNQQK VLLSRWLLTR PQFLILDEPT RGIDVGAHAE IIRLIETLCA
460 470 480 490 500
DGLALLVISS ELEELVGYAD RVIIMRDRKQ VAEIPLAELS VPAIMNAIAA
Length:500
Mass (Da):55,260
Last modified:August 16, 2004 - v1
Checksum:i251FE62D4FADF959
GO

Sequence cautioni

The sequence AAA97126.1 differs from that shown. Reason: Frameshift at position 369. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97125.1. Frameshift.
U14003 Genomic DNA. Translation: AAA97126.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48244.1.
AP009048 Genomic DNA. Translation: BAE78229.1.
PIRiS56454.
S56455.
RefSeqiWP_000205805.1. NZ_LN832404.1.
YP_026286.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48244; AAT48244; b4485.
BAE78229; BAE78229; BAE78229.
GeneIDi2847725.
KEGGiecj:JW5752.
eco:b4485.
PATRICi32124031. VBIEscCol129921_4360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U14003 Genomic DNA. Translation: AAA97125.1. Frameshift.
U14003 Genomic DNA. Translation: AAA97126.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48244.1.
AP009048 Genomic DNA. Translation: BAE78229.1.
PIRiS56454.
S56455.
RefSeqiWP_000205805.1. NZ_LN832404.1.
YP_026286.1. NC_000913.3.

3D structure databases

ProteinModelPortaliQ6BEX0.
SMRiQ6BEX0. Positions 14-477.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261872. 25 interactions.
DIPiDIP-48183N.
STRINGi511145.b4485.

Protein family/group databases

TCDBi3.A.1.2.25. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiQ6BEX0.
PRIDEiQ6BEX0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48244; AAT48244; b4485.
BAE78229; BAE78229; BAE78229.
GeneIDi2847725.
KEGGiecj:JW5752.
eco:b4485.
PATRICi32124031. VBIEscCol129921_4360.

Organism-specific databases

EchoBASEiEB2410.
EcoGeneiEG12518. ytfR.

Phylogenomic databases

eggNOGiENOG4105C2J. Bacteria.
COG1129. LUCA.
InParanoidiQ6BEX0.
KOiK02056.
OMAiFVGTRDT.
OrthoDBiEOG6QK4RR.
PhylomeDBiQ6BEX0.

Enzyme and pathway databases

BioCyciEcoCyc:YTFR-MONOMER.
ECOL316407:JW5752-MONOMER.
MetaCyc:YTFR-MONOMER.

Miscellaneous databases

PROiQ6BEX0.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes."
    Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 23:2105-2119(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: SEQUENCE REVISION.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYTFR_ECOLI
AccessioniPrimary (citable) accession number: Q6BEX0
Secondary accession number(s): P39326, P39327, Q2M677
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: August 16, 2004
Last modified: January 20, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.