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Q6AY81

- Q6AY81_RAT

UniProt

Q6AY81 - Q6AY81_RAT

Protein
Submitted name:

Neural proliferation, differentiation and control, 1

Gene

Npdc1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 62 (01 Oct 2014)
      Sequence version 1 (13 Sep 2004)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Neural proliferation, differentiation and control, 1Imported
    Submitted name:
    Neural proliferation, differentiation and control, 1, isoform CRA_aImported
    Submitted name:
    Protein Npdc1Imported
    Gene namesi
    Name:Npdc1Imported
    ORF Names:rCG_45748Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 3

    Organism-specific databases

    RGDi1303156. Npdc1.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriQ6AY81.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000040208.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG262778.
    GeneTreeiENSGT00440000038604.
    HOGENOMiHOG000231546.
    HOVERGENiHBG052657.
    InParanoidiQ6AY81.
    OMAiPCLQSFQ.
    OrthoDBiEOG7MSMQP.

    Family and domain databases

    InterProiIPR009635. NPDC1.
    [Graphical view]
    PANTHERiPTHR23352. PTHR23352. 1 hit.
    PfamiPF06809. NPDC1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6AY81-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATPVPPPSP RHLRLLRLLL SGLILGAALN GATARRPDAP TCPGSLDCAL    50
    KRRAKCPPGA HACGPCLQSF QEDQRGVCVP RKHQSSGEGL PQPRLEEEID 100
    SLARELALKE KEAGHPRLTA QPLPEASQKL LEPAATLGFS QWGQQLEPGL 150
    PSTHGTSSPT PHTSLSARAS SGPVQMSPLE PQGRGNGLAL VLILAFCLAS 200
    TAALAVAALC WCRLQREIRL TQKADYTATA KGPTSPTTPR ISPGDERLAH 250
    SAEMYHYQHQ RQQMLCLERH KDPPKELESA SSDEENEDGD FTVYECPGLA 300
    PTGEMEVRNP LFDHSTLSAP VPGPHSSPPL Q 331
    Length:331
    Mass (Da):35,516
    Last modified:September 13, 2004 - v1
    Checksum:i569332791A076532
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06021895 Genomic DNA. No translation available.
    BC079156 mRNA. Translation: AAH79156.1.
    CH474001 Genomic DNA. Translation: EDL93589.1.
    RefSeqiNP_001004231.1. NM_001004231.1.
    UniGeneiRn.5802.

    Genome annotation databases

    EnsembliENSRNOT00000018927; ENSRNOP00000018927; ENSRNOG00000013895.
    GeneIDi296562.
    KEGGirno:296562.
    UCSCiRGD:1303156. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06021895 Genomic DNA. No translation available.
    BC079156 mRNA. Translation: AAH79156.1 .
    CH474001 Genomic DNA. Translation: EDL93589.1 .
    RefSeqi NP_001004231.1. NM_001004231.1.
    UniGenei Rn.5802.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000040208.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000018927 ; ENSRNOP00000018927 ; ENSRNOG00000013895 .
    GeneIDi 296562.
    KEGGi rno:296562.
    UCSCi RGD:1303156. rat.

    Organism-specific databases

    CTDi 56654.
    RGDi 1303156. Npdc1.

    Phylogenomic databases

    eggNOGi NOG262778.
    GeneTreei ENSGT00440000038604.
    HOGENOMi HOG000231546.
    HOVERGENi HBG052657.
    InParanoidi Q6AY81.
    OMAi PCLQSFQ.
    OrthoDBi EOG7MSMQP.

    Miscellaneous databases

    NextBioi 641388.
    PROi Q6AY81.

    Gene expression databases

    Genevestigatori Q6AY81.

    Family and domain databases

    InterProi IPR009635. NPDC1.
    [Graphical view ]
    PANTHERi PTHR23352. PTHR23352. 1 hit.
    Pfami PF06809. NPDC1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: KidneyImported.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    5. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiQ6AY81_RAT
    AccessioniPrimary (citable) accession number: Q6AY81
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 13, 2004
    Last sequence update: September 13, 2004
    Last modified: October 1, 2014
    This is version 62 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3