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Q6AY81

- Q6AY81_RAT

UniProt

Q6AY81 - Q6AY81_RAT

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Protein
Submitted name: Neural proliferation, differentiation and control, 1
Gene
Npdc1, rCG_45748
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Neural proliferation, differentiation and control, 1Imported
Submitted name:
Neural proliferation, differentiation and control, 1, isoform CRA_aImported
Submitted name:
Protein Npdc1Imported
Gene namesi
Name:Npdc1Imported
ORF Names:rCG_45748Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 3

Organism-specific databases

RGDi1303156. Npdc1.

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: InterPro
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ6AY81.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040208.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG262778.
GeneTreeiENSGT00440000038604.
HOGENOMiHOG000231546.
HOVERGENiHBG052657.
InParanoidiQ6AY81.
OMAiPCLQSFQ.
OrthoDBiEOG7MSMQP.

Family and domain databases

InterProiIPR009635. NPDC1.
[Graphical view]
PANTHERiPTHR23352. PTHR23352. 1 hit.
PfamiPF06809. NPDC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6AY81-1 [UniParc]FASTAAdd to Basket

« Hide

MATPVPPPSP RHLRLLRLLL SGLILGAALN GATARRPDAP TCPGSLDCAL    50
KRRAKCPPGA HACGPCLQSF QEDQRGVCVP RKHQSSGEGL PQPRLEEEID 100
SLARELALKE KEAGHPRLTA QPLPEASQKL LEPAATLGFS QWGQQLEPGL 150
PSTHGTSSPT PHTSLSARAS SGPVQMSPLE PQGRGNGLAL VLILAFCLAS 200
TAALAVAALC WCRLQREIRL TQKADYTATA KGPTSPTTPR ISPGDERLAH 250
SAEMYHYQHQ RQQMLCLERH KDPPKELESA SSDEENEDGD FTVYECPGLA 300
PTGEMEVRNP LFDHSTLSAP VPGPHSSPPL Q 331
Length:331
Mass (Da):35,516
Last modified:September 13, 2004 - v1
Checksum:i569332791A076532
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06021895 Genomic DNA. No translation available.
BC079156 mRNA. Translation: AAH79156.1.
CH474001 Genomic DNA. Translation: EDL93589.1.
RefSeqiNP_001004231.1. NM_001004231.1.
UniGeneiRn.5802.

Genome annotation databases

EnsembliENSRNOT00000018927; ENSRNOP00000018927; ENSRNOG00000013895.
GeneIDi296562.
KEGGirno:296562.
UCSCiRGD:1303156. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06021895 Genomic DNA. No translation available.
BC079156 mRNA. Translation: AAH79156.1 .
CH474001 Genomic DNA. Translation: EDL93589.1 .
RefSeqi NP_001004231.1. NM_001004231.1.
UniGenei Rn.5802.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000040208.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000018927 ; ENSRNOP00000018927 ; ENSRNOG00000013895 .
GeneIDi 296562.
KEGGi rno:296562.
UCSCi RGD:1303156. rat.

Organism-specific databases

CTDi 56654.
RGDi 1303156. Npdc1.

Phylogenomic databases

eggNOGi NOG262778.
GeneTreei ENSGT00440000038604.
HOGENOMi HOG000231546.
HOVERGENi HBG052657.
InParanoidi Q6AY81.
OMAi PCLQSFQ.
OrthoDBi EOG7MSMQP.

Miscellaneous databases

NextBioi 641388.
PROi Q6AY81.

Gene expression databases

Genevestigatori Q6AY81.

Family and domain databases

InterProi IPR009635. NPDC1.
[Graphical view ]
PANTHERi PTHR23352. PTHR23352. 1 hit.
Pfami PF06809. NPDC1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: KidneyImported.
  2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  5. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiQ6AY81_RAT
AccessioniPrimary (citable) accession number: Q6AY81
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2004
Last sequence update: September 13, 2004
Last modified: September 3, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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