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Protein
Submitted name:

Neural proliferation, differentiation and control, 1

Gene

Npdc1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Neural proliferation, differentiation and control, 1Imported
Submitted name:
Neural proliferation, differentiation and control, 1, isoform CRA_aImported
Submitted name:
Protein Npdc1Imported
Gene namesi
Name:Npdc1Imported
ORF Names:rCG_45748Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1303156. Npdc1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei187 – 21226HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3434Sequence analysisAdd
BLAST
Chaini35 – 331297Sequence analysisPRO_5007925594Add
BLAST

PTM databases

PhosphoSiteiQ6AY81.

Expressioni

Gene expression databases

BgeeiENSRNOG00000013895.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000018927.

Family & Domainsi

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3884. Eukaryota.
ENOG4111QDP. LUCA.
GeneTreeiENSGT00440000038604.
HOGENOMiHOG000231546.
HOVERGENiHBG052657.
OMAiEPVHMSP.
OrthoDBiEOG091G0K5Z.

Family and domain databases

InterProiIPR009635. NPDC1.
[Graphical view]
PANTHERiPTHR23352. PTHR23352. 1 hit.
PfamiPF06809. NPDC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6AY81-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPVPPPSP RHLRLLRLLL SGLILGAALN GATARRPDAP TCPGSLDCAL
60 70 80 90 100
KRRAKCPPGA HACGPCLQSF QEDQRGVCVP RKHQSSGEGL PQPRLEEEID
110 120 130 140 150
SLARELALKE KEAGHPRLTA QPLPEASQKL LEPAATLGFS QWGQQLEPGL
160 170 180 190 200
PSTHGTSSPT PHTSLSARAS SGPVQMSPLE PQGRGNGLAL VLILAFCLAS
210 220 230 240 250
TAALAVAALC WCRLQREIRL TQKADYTATA KGPTSPTTPR ISPGDERLAH
260 270 280 290 300
SAEMYHYQHQ RQQMLCLERH KDPPKELESA SSDEENEDGD FTVYECPGLA
310 320 330
PTGEMEVRNP LFDHSTLSAP VPGPHSSPPL Q
Length:331
Mass (Da):35,516
Last modified:September 13, 2004 - v1
Checksum:i569332791A076532
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051241 Genomic DNA. No translation available.
BC079156 mRNA. Translation: AAH79156.1.
CH474001 Genomic DNA. Translation: EDL93589.1.
RefSeqiNP_001004231.1. NM_001004231.1.
UniGeneiRn.5802.

Genome annotation databases

EnsembliENSRNOT00000018927; ENSRNOP00000018927; ENSRNOG00000013895.
GeneIDi296562.
KEGGirno:296562.
UCSCiRGD:1303156. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051241 Genomic DNA. No translation available.
BC079156 mRNA. Translation: AAH79156.1.
CH474001 Genomic DNA. Translation: EDL93589.1.
RefSeqiNP_001004231.1. NM_001004231.1.
UniGeneiRn.5802.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000018927.

PTM databases

PhosphoSiteiQ6AY81.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000018927; ENSRNOP00000018927; ENSRNOG00000013895.
GeneIDi296562.
KEGGirno:296562.
UCSCiRGD:1303156. rat.

Organism-specific databases

CTDi56654.
RGDi1303156. Npdc1.

Phylogenomic databases

eggNOGiKOG3884. Eukaryota.
ENOG4111QDP. LUCA.
GeneTreeiENSGT00440000038604.
HOGENOMiHOG000231546.
HOVERGENiHBG052657.
OMAiEPVHMSP.
OrthoDBiEOG091G0K5Z.

Gene expression databases

BgeeiENSRNOG00000013895.

Family and domain databases

InterProiIPR009635. NPDC1.
[Graphical view]
PANTHERiPTHR23352. PTHR23352. 1 hit.
PfamiPF06809. NPDC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ6AY81_RAT
AccessioniPrimary (citable) accession number: Q6AY81
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2004
Last sequence update: September 13, 2004
Last modified: September 7, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.