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Protein
Submitted name:

Neural proliferation, differentiation and control, 1

Gene

Npdc1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

ReactomeiR-RNO-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell

Names & Taxonomyi

Protein namesi
Submitted name:
Neural proliferation, differentiation and control, 1Imported
Submitted name:
Neural proliferation, differentiation and control, 1, isoform CRA_aImported
Gene namesi
Name:Npdc1Imported
ORF Names:rCG_45748Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1303156 Npdc1

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei187 – 212HelicalSequence analysisAdd BLAST26

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 34Sequence analysisAdd BLAST34
ChainiPRO_501431032135 – 331Sequence analysisAdd BLAST297

PTM databases

SwissPalmiQ6AY81

Expressioni

Gene expression databases

BgeeiENSRNOG00000013895

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000018927

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili92 – 112Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3884 Eukaryota
ENOG4111QDP LUCA
GeneTreeiENSGT00440000038604
HOGENOMiHOG000231546
HOVERGENiHBG052657
OMAiHVCGPCL
OrthoDBiEOG091G0K5Z

Family and domain databases

InterProiView protein in InterPro
IPR009635 NPDC1
PANTHERiPTHR23352 PTHR23352, 1 hit
PfamiView protein in Pfam
PF06809 NPDC1, 1 hit

Sequencei

Sequence statusi: Complete.

Q6AY81-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPVPPPSP RHLRLLRLLL SGLILGAALN GATARRPDAP TCPGSLDCAL
60 70 80 90 100
KRRAKCPPGA HACGPCLQSF QEDQRGVCVP RKHQSSGEGL PQPRLEEEID
110 120 130 140 150
SLARELALKE KEAGHPRLTA QPLPEASQKL LEPAATLGFS QWGQQLEPGL
160 170 180 190 200
PSTHGTSSPT PHTSLSARAS SGPVQMSPLE PQGRGNGLAL VLILAFCLAS
210 220 230 240 250
TAALAVAALC WCRLQREIRL TQKADYTATA KGPTSPTTPR ISPGDERLAH
260 270 280 290 300
SAEMYHYQHQ RQQMLCLERH KDPPKELESA SSDEENEDGD FTVYECPGLA
310 320 330
PTGEMEVRNP LFDHSTLSAP VPGPHSSPPL Q
Length:331
Mass (Da):35,516
Last modified:September 13, 2004 - v1
Checksum:i569332791A076532
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051241 Genomic DNA No translation available.
BC079156 mRNA Translation: AAH79156.1
CH474001 Genomic DNA Translation: EDL93589.1
RefSeqiNP_001004231.1, NM_001004231.1
UniGeneiRn.5802

Genome annotation databases

EnsembliENSRNOT00000018927; ENSRNOP00000018927; ENSRNOG00000013895
GeneIDi296562
KEGGirno:296562
UCSCiRGD:1303156 rat

Similar proteinsi

Entry informationi

Entry nameiQ6AY81_RAT
AccessioniPrimary (citable) accession number: Q6AY81
Entry historyiIntegrated into UniProtKB/TrEMBL: September 13, 2004
Last sequence update: September 13, 2004
Last modified: May 23, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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