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Q6AY30 (SCPDL_RAT) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Saccharopine dehydrogenase-like oxidoreductase
EC=1.-.-.-
Gene names
Name:Sccpdh
OrganismRattus norvegicus (Rat)
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length429 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the saccharopine dehydrogenase family.

Ontologies

Keywords
   Molecular functionOxidoreductase
   PTMAcetylation
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionnucleotide binding

Inferred from electronic annotation. Source: InterPro

oxidoreductase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 429428Saccharopine dehydrogenase-like oxidoreductase
PRO_0000212843

Amino acid modifications

Modified residue21N-acetylalanine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q6AY30 [UniParc].

Last modified September 13, 2004. Version 1.
Checksum: D16F3BE0BBF8D300

FASTA42947,088
        10         20         30         40         50         60 
MATEQRPFQL VVFGASGFTG QFVTEEVARE QMASEQSSRL PWAVAGRSKE KLQQVLEKAA 

        70         80         90        100        110        120 
QKLGRATLSS EVGIIICDIS NPASLDEMAK KATLVLNCVG PYRFYGEPVV KACIENGTSC 

       130        140        150        160        170        180 
IDICGEPQFL ELMHVKYHEK AAEKGVYIIG SSGFDSIPAD LGVLYTRNQM NGTLTAVESF 

       190        200        210        220        230        240 
LTINSGPEGL CIHDGTWKSA IYGFGDKGSL RKLRSVSNLK PVPVIGSKLK RRWPVSYCRE 

       250        260        270        280        290        300 
LNSYAIPFLG SDMSVVKRTQ RYLHENLEDS PVQYAAYITV GGITSVIKLM FAGLFFLFFV 

       310        320        330        340        350        360 
KFSIGRQLLV KFPWLFSFGY FSKRGPTQKQ MDESSFTMTF FGQGYSHGVS AEKNKPNIRI 

       370        380        390        400        410        420 
CTQVKGPEAG YVATPIAMVQ AAVTFLNDAS DLPKGGGVFT PGAAFSRTKL IDRLNQHGIQ 


FSVISSSEV

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC079215 mRNA. Translation: AAH79215.1.
IPIIPI00372804.
RefSeqNP_001014007.1. NM_001013985.1.
UniGeneRn.23989.

3D structure databases

ProteinModelPortalQ6AY30.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ6AY30.

PTM databases

PhosphoSiteQ6AY30.

Proteomic databases

PRIDEQ6AY30.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000003791; ENSRNOP00000003791; ENSRNOG00000037984.
GeneID305021.
KEGGrno:305021.
NMPDRfig|10116.3.peg.9663.
UCSCNM_001013985. rat.

Organism-specific databases

CTD51097.
RGD1311440. Sccpdh.

Phylogenomic databases

eggNOGroNOG13655.
GeneTreeENSGT00390000004799.
HOVERGENHBG057028.
InParanoidQ6AY30.
OMALMYWKYH.
OrthoDBEOG4C5CJK.

Gene expression databases

ArrayExpressQ6AY30.
GenevestigatorQ6AY30.
GermOnlineENSRNOG00000037984. Rattus norvegicus.

Family and domain databases

InterProIPR016040. NAD(P)-bd_dom.
IPR005097. Saccharopine_DH/HSpermid_syn.
[Graphical view]
Gene3DG3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
PfamPF03435. Saccharop_dh. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio653990.

Entry information

Entry nameSCPDL_RAT
AccessionPrimary (citable) accession number: Q6AY30
Entry history
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: September 13, 2004
Last modified: January 25, 2012
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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