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Protein

PHD finger protein 7

Gene

Phf7

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in spermatogenesis.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri95 – 14551PHD-type; atypicalAdd
BLAST
Zinc fingeri159 – 20749RING-type; degeneratePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
PHD finger protein 7
Gene namesi
Name:Phf7
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 16

Organism-specific databases

RGDi1308638. Phf7.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 380380PHD finger protein 7PRO_0000055998Add
BLAST

Proteomic databases

PaxDbiQ6AXW4.
PRIDEiQ6AXW4.

Expressioni

Gene expression databases

GenevisibleiQ6AXW4. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040832.

Structurei

3D structure databases

ProteinModelPortaliQ6AXW4.
SMRiQ6AXW4. Positions 231-307.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 PHD-type zinc finger.Curated
Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri95 – 14551PHD-type; atypicalAdd
BLAST
Zinc fingeri159 – 20749RING-type; degeneratePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1084. Eukaryota.
COG2940. LUCA.
GeneTreeiENSGT00390000005246.
HOGENOMiHOG000236336.
HOVERGENiHBG053588.
InParanoidiQ6AXW4.
OMAiCLYEQGR.
OrthoDBiEOG78WKSC.
PhylomeDBiQ6AXW4.
TreeFamiTF325426.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
SMARTiSM00249. PHD. 2 hits.
[Graphical view]
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6AXW4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTIKEKKEH PRLRKTARTK KVTHRKLSSG PVCLLCFQEP GDPEKLGEFL
60 70 80 90 100
QKDNLCVHYF CLILSSKLPQ KGQPNRGLHG FMPEDIKKEA ARASRKVCFV
110 120 130 140 150
CKRKGAAIRC QKDQCVQNFH LPCGQERGCL SQFFGEYKSY CGKHRPTQNI
160 170 180 190 200
HQRSFGESCV LCCEDLSRAS VENIRSPCCS QAIYHRKCIQ KYAHTSAKHF
210 220 230 240 250
FKCPQCNNRE EFPQEMLRMG IHIPDRDAAW ELEPGAFSEL YQRYQHCDAP
260 270 280 290 300
ICLYEQGRDS FEDEGRWRLI LCATCGSHGT HRDCSSLRPN SKKWECNECL
310 320 330 340 350
PASTEDSVSE NLGDTPCCSS TFCPHEPFLR ATSLEENPGS SWTNWLQPSL
360 370 380
LEKPESSSGS SCQSWRSKGI KVTKDCKKSK
Length:380
Mass (Da):43,388
Last modified:September 13, 2004 - v1
Checksum:i89A41C01AD5742F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC079288 mRNA. Translation: AAH79288.1.
RefSeqiNP_001012211.1. NM_001012211.1.
UniGeneiRn.24375.

Genome annotation databases

EnsembliENSRNOT00000044991; ENSRNOP00000040832; ENSRNOG00000018996.
GeneIDi364510.
KEGGirno:364510.
UCSCiRGD:1308638. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC079288 mRNA. Translation: AAH79288.1.
RefSeqiNP_001012211.1. NM_001012211.1.
UniGeneiRn.24375.

3D structure databases

ProteinModelPortaliQ6AXW4.
SMRiQ6AXW4. Positions 231-307.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040832.

Proteomic databases

PaxDbiQ6AXW4.
PRIDEiQ6AXW4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000044991; ENSRNOP00000040832; ENSRNOG00000018996.
GeneIDi364510.
KEGGirno:364510.
UCSCiRGD:1308638. rat.

Organism-specific databases

CTDi51533.
RGDi1308638. Phf7.

Phylogenomic databases

eggNOGiKOG1084. Eukaryota.
COG2940. LUCA.
GeneTreeiENSGT00390000005246.
HOGENOMiHOG000236336.
HOVERGENiHBG053588.
InParanoidiQ6AXW4.
OMAiCLYEQGR.
OrthoDBiEOG78WKSC.
PhylomeDBiQ6AXW4.
TreeFamiTF325426.

Miscellaneous databases

NextBioi685485.
PROiQ6AXW4.

Gene expression databases

GenevisibleiQ6AXW4. RN.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
SMARTiSM00249. PHD. 2 hits.
[Graphical view]
SUPFAMiSSF57903. SSF57903. 1 hit.
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.

Entry informationi

Entry nameiPHF7_RAT
AccessioniPrimary (citable) accession number: Q6AXW4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: September 13, 2004
Last modified: May 11, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.