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Protein

PHD finger protein 7

Gene

Phf7

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May play a role in spermatogenesis.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri30 – 68C2HC pre-PHD-typePROSITE-ProRule annotationAdd BLAST39
Zinc fingeri96 – 145PHD-typePROSITE-ProRule annotationAdd BLAST50
Zinc fingeri159 – 207RING-type; degeneratePROSITE-ProRule annotationAdd BLAST49

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
PHD finger protein 7
Gene namesi
Name:Phf7
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 16

Organism-specific databases

RGDi1308638 Phf7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000559981 – 380PHD finger protein 7Add BLAST380

Proteomic databases

PaxDbiQ6AXW4
PRIDEiQ6AXW4

Expressioni

Gene expression databases

BgeeiENSRNOG00000018996
GenevisibleiQ6AXW4 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040832

Structurei

3D structure databases

ProteinModelPortaliQ6AXW4
SMRiQ6AXW4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri30 – 68C2HC pre-PHD-typePROSITE-ProRule annotationAdd BLAST39
Zinc fingeri96 – 145PHD-typePROSITE-ProRule annotationAdd BLAST50
Zinc fingeri159 – 207RING-type; degeneratePROSITE-ProRule annotationAdd BLAST49

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG1084 Eukaryota
COG2940 LUCA
GeneTreeiENSGT00390000005246
HOGENOMiHOG000236336
HOVERGENiHBG053588
InParanoidiQ6AXW4
OMAiFFGEYKS
OrthoDBiEOG091G0Q24
PhylomeDBiQ6AXW4
TreeFamiTF325426

Family and domain databases

Gene3Di3.30.40.10, 2 hits
InterProiView protein in InterPro
IPR034732 EPHD
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
SMARTiView protein in SMART
SM00249 PHD, 2 hits
SUPFAMiSSF57903 SSF57903, 1 hit
PROSITEiView protein in PROSITE
PS51805 EPHD, 1 hit
PS50089 ZF_RING_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q6AXW4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTIKEKKEH PRLRKTARTK KVTHRKLSSG PVCLLCFQEP GDPEKLGEFL
60 70 80 90 100
QKDNLCVHYF CLILSSKLPQ KGQPNRGLHG FMPEDIKKEA ARASRKVCFV
110 120 130 140 150
CKRKGAAIRC QKDQCVQNFH LPCGQERGCL SQFFGEYKSY CGKHRPTQNI
160 170 180 190 200
HQRSFGESCV LCCEDLSRAS VENIRSPCCS QAIYHRKCIQ KYAHTSAKHF
210 220 230 240 250
FKCPQCNNRE EFPQEMLRMG IHIPDRDAAW ELEPGAFSEL YQRYQHCDAP
260 270 280 290 300
ICLYEQGRDS FEDEGRWRLI LCATCGSHGT HRDCSSLRPN SKKWECNECL
310 320 330 340 350
PASTEDSVSE NLGDTPCCSS TFCPHEPFLR ATSLEENPGS SWTNWLQPSL
360 370 380
LEKPESSSGS SCQSWRSKGI KVTKDCKKSK
Length:380
Mass (Da):43,388
Last modified:September 13, 2004 - v1
Checksum:i89A41C01AD5742F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC079288 mRNA Translation: AAH79288.1
RefSeqiNP_001012211.1, NM_001012211.1
UniGeneiRn.24375

Genome annotation databases

EnsembliENSRNOT00000044991; ENSRNOP00000040832; ENSRNOG00000018996
GeneIDi364510
KEGGirno:364510
UCSCiRGD:1308638 rat

Similar proteinsi

Entry informationi

Entry nameiPHF7_RAT
AccessioniPrimary (citable) accession number: Q6AXW4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: September 13, 2004
Last modified: May 23, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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