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Protein

Outer dense fiber protein 4

Gene

Odf4

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Component of the outer dense fibers (ODF) of spermatozoa which could be involved in sperm tail structure, sperm movement and general organization of cellular cytoskeleton.By similarity

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein
Biological processDifferentiation, Spermatogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Outer dense fiber protein 4
Alternative name(s):
Outer dense fiber of sperm tails protein 4
Gene namesi
Name:Odf4
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1359332 Odf4

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei44 – 64HelicalSequence analysisAdd BLAST21
Transmembranei132 – 152HelicalSequence analysisAdd BLAST21
Transmembranei164 – 184HelicalSequence analysisAdd BLAST21
Transmembranei201 – 221HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003047241 – 290Outer dense fiber protein 4Add BLAST290

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei28PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ6AXT9
PRIDEiQ6AXT9

Expressioni

Gene expression databases

BgeeiENSRNOG00000004225
GenevisibleiQ6AXT9 RN

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi57 – 61Poly-Leu5
Compositional biasi235 – 238Poly-Ser4

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IZV4 Eukaryota
ENOG4111BHV LUCA
GeneTreeiENSGT00390000003542
HOGENOMiHOG000115258
HOVERGENiHBG097511
InParanoidiQ6AXT9
OMAiLFPINIW
OrthoDBiEOG091G0NXG
PhylomeDBiQ6AXT9

Family and domain databases

InterProiView protein in InterPro
IPR004031 PMP22/EMP/MP20/Claudin
PfamiView protein in Pfam
PF00822 PMP22_Claudin, 1 hit

Sequencei

Sequence statusi: Complete.

Q6AXT9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESDLTVEES ETIKTRSRRP LTEHRRHSLL PLQWKLAHSS RWMAQVVASE
60 70 80 90 100
FSLLAFLLLL LMVFSKKWLY PSKSRFHQRY PQNITKRVYT SIHSMSTGLL
110 120 130 140 150
YICISKSCLS SDNEEDNFKM WTIHPAFGVA KISFILAVGL GFVLTVWLHL
160 170 180 190 200
PYLPCLQRMP FFGLIGIILS FCEVTLIFLT LLLFPVNLWI YELKKNISVP
210 220 230 240 250
IGWSYFIGWL VLILYLTCGI LCYLNHKNFW SLIMSSSSIN ATCSSSVPVS
260 270 280 290
LMNTSQISKS QADILDPTQD DQKPLSSDNI ALPPNPDTTD
Length:290
Mass (Da):33,146
Last modified:September 13, 2004 - v1
Checksum:i4BC2A51749650BB7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC079319 mRNA Translation: AAH79319.1
RefSeqiNP_001007671.1, NM_001007670.1
UniGeneiRn.137152

Genome annotation databases

EnsembliENSRNOT00000005667; ENSRNOP00000005667; ENSRNOG00000004225
GeneIDi303236
KEGGirno:303236
UCSCiRGD:1359332 rat

Similar proteinsi

Entry informationi

Entry nameiODFP4_RAT
AccessioniPrimary (citable) accession number: Q6AXT9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: September 13, 2004
Last modified: May 23, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health