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Protein

Probable ribonuclease P/MRP protein subunit POP5

Gene

EMB1687

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP (By similarity).By similarity

Catalytic activityi

Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

GO - Molecular functioni

  1. ribonuclease P activity Source: UniProtKB-EC

GO - Biological processi

  1. tRNA processing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

tRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
Alternative name(s):
Protein EMBRYO DEFECTIVE 1687
Gene namesi
Name:EMB1687
Ordered Locus Names:At1g04635
ORF Names:T1G11.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G04635.

Subcellular locationi

Nucleusnucleolus By similarity

GO - Cellular componenti

  1. nucleolus Source: UniProtKB-SubCell
  2. vacuole Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 151151Probable ribonuclease P/MRP protein subunit POP5PRO_0000140013Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriQ6AWV1.

Interactioni

Protein-protein interaction databases

BioGridi24695. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ6AWV1.
SMRiQ6AWV1. Positions 1-121.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1369.
HOGENOMiHOG000006304.
InParanoidiQ6AWV1.
KOiK03537.
OMAiLECDEAK.
PhylomeDBiQ6AWV1.

Family and domain databases

InterProiIPR002759. RNase_P/MRP_subunit.
[Graphical view]
PfamiPF01900. RNase_P_Rpp14. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6AWV1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVGFKNRYML MEVFLDPDKD LLGEGTPIIL TQFNLSKAIK DSILVNFGEC
60 70 80 90 100
GLGSSLGSFQ VKYVNPITKL CIVRSSREEH RQVWLAITLV KSIGNCPVIL
110 120 130 140 150
NLLDISGCIR ACRDTALKCD KEKFEQCSKS LSEEEIRQMN TSLEKIKLLE

N
Length:151
Mass (Da):17,017
Last modified:September 13, 2004 - v1
Checksum:i6EC227EF0C0116E9
GO

Sequence cautioni

The sequence AAB80636.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At1g04640 has been split into 2 genes: At1g04635 and At1g04640.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002376 Genomic DNA. Translation: AAB80636.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE27725.1.
BT015147 mRNA. Translation: AAT85743.1.
BT015896 mRNA. Translation: AAU95432.1.
PIRiB86179.
RefSeqiNP_683274.1. NM_148433.2.
UniGeneiAt.49851.

Genome annotation databases

EnsemblPlantsiAT1G04635.1; AT1G04635.1; AT1G04635.
GeneIDi839460.
KEGGiath:AT1G04635.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002376 Genomic DNA. Translation: AAB80636.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE27725.1.
BT015147 mRNA. Translation: AAT85743.1.
BT015896 mRNA. Translation: AAU95432.1.
PIRiB86179.
RefSeqiNP_683274.1. NM_148433.2.
UniGeneiAt.49851.

3D structure databases

ProteinModelPortaliQ6AWV1.
SMRiQ6AWV1. Positions 1-121.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24695. 1 interaction.

Protocols and materials databases

DNASUi839460.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G04635.1; AT1G04635.1; AT1G04635.
GeneIDi839460.
KEGGiath:AT1G04635.

Organism-specific databases

TAIRiAT1G04635.

Phylogenomic databases

eggNOGiCOG1369.
HOGENOMiHOG000006304.
InParanoidiQ6AWV1.
KOiK03537.
OMAiLECDEAK.
PhylomeDBiQ6AWV1.

Gene expression databases

GenevestigatoriQ6AWV1.

Family and domain databases

InterProiIPR002759. RNase_P/MRP_subunit.
[Graphical view]
PfamiPF01900. RNase_P_Rpp14. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.

Entry informationi

Entry nameiPOP5_ARATH
AccessioniPrimary (citable) accession number: Q6AWV1
Secondary accession number(s): O23021
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: September 13, 2004
Last modified: January 7, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.