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Q6AWV1

- POP5_ARATH

UniProt

Q6AWV1 - POP5_ARATH

Protein

Probable ribonuclease P/MRP protein subunit POP5

Gene

EMB1687

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (13 Sep 2004)
      Previous versions | rss
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    Functioni

    Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP By similarity.By similarity

    Catalytic activityi

    Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

    GO - Molecular functioni

    1. ribonuclease P activity Source: UniProtKB-EC

    GO - Biological processi

    1. tRNA processing Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    tRNA processing

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
    Alternative name(s):
    Protein EMBRYO DEFECTIVE 1687
    Gene namesi
    Name:EMB1687
    Ordered Locus Names:At1g04635
    ORF Names:T1G11.24
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 1

    Organism-specific databases

    TAIRiAT1G04635.

    Subcellular locationi

    Nucleusnucleolus By similarity

    GO - Cellular componenti

    1. nucleolus Source: UniProtKB-SubCell
    2. vacuole Source: TAIR

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 151151Probable ribonuclease P/MRP protein subunit POP5PRO_0000140013Add
    BLAST

    Expressioni

    Gene expression databases

    GenevestigatoriQ6AWV1.

    Interactioni

    Protein-protein interaction databases

    BioGridi24695. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ6AWV1.
    SMRiQ6AWV1. Positions 1-121.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG1369.
    HOGENOMiHOG000006304.
    InParanoidiQ6AWV1.
    KOiK03537.
    OMAiLECDEAK.
    PhylomeDBiQ6AWV1.

    Family and domain databases

    InterProiIPR002759. RNase_P/MRP_subunit.
    [Graphical view]
    PfamiPF01900. RNase_P_Rpp14. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6AWV1-1 [UniParc]FASTAAdd to Basket

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    MVGFKNRYML MEVFLDPDKD LLGEGTPIIL TQFNLSKAIK DSILVNFGEC    50
    GLGSSLGSFQ VKYVNPITKL CIVRSSREEH RQVWLAITLV KSIGNCPVIL 100
    NLLDISGCIR ACRDTALKCD KEKFEQCSKS LSEEEIRQMN TSLEKIKLLE 150
    N 151
    Length:151
    Mass (Da):17,017
    Last modified:September 13, 2004 - v1
    Checksum:i6EC227EF0C0116E9
    GO

    Sequence cautioni

    The sequence AAB80636.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At1g04640 has been split into 2 genes: At1g04635 and At1g04640.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002376 Genomic DNA. Translation: AAB80636.1. Sequence problems.
    CP002684 Genomic DNA. Translation: AEE27725.1.
    BT015147 mRNA. Translation: AAT85743.1.
    BT015896 mRNA. Translation: AAU95432.1.
    PIRiB86179.
    RefSeqiNP_683274.1. NM_148433.2.
    UniGeneiAt.49851.

    Genome annotation databases

    EnsemblPlantsiAT1G04635.1; AT1G04635.1; AT1G04635.
    GeneIDi839460.
    KEGGiath:AT1G04635.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002376 Genomic DNA. Translation: AAB80636.1 . Sequence problems.
    CP002684 Genomic DNA. Translation: AEE27725.1 .
    BT015147 mRNA. Translation: AAT85743.1 .
    BT015896 mRNA. Translation: AAU95432.1 .
    PIRi B86179.
    RefSeqi NP_683274.1. NM_148433.2.
    UniGenei At.49851.

    3D structure databases

    ProteinModelPortali Q6AWV1.
    SMRi Q6AWV1. Positions 1-121.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 24695. 1 interaction.

    Protocols and materials databases

    DNASUi 839460.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT1G04635.1 ; AT1G04635.1 ; AT1G04635 .
    GeneIDi 839460.
    KEGGi ath:AT1G04635.

    Organism-specific databases

    TAIRi AT1G04635.

    Phylogenomic databases

    eggNOGi COG1369.
    HOGENOMi HOG000006304.
    InParanoidi Q6AWV1.
    KOi K03537.
    OMAi LECDEAK.
    PhylomeDBi Q6AWV1.

    Gene expression databases

    Genevestigatori Q6AWV1.

    Family and domain databases

    InterProi IPR002759. RNase_P/MRP_subunit.
    [Graphical view ]
    Pfami PF01900. RNase_P_Rpp14. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
      Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
      , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
      Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.

    Entry informationi

    Entry nameiPOP5_ARATH
    AccessioniPrimary (citable) accession number: Q6AWV1
    Secondary accession number(s): O23021
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 20, 2005
    Last sequence update: September 13, 2004
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3