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Protein

Probable ribonuclease P/MRP protein subunit POP5

Gene

EMB1687

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP (By similarity).By similarity

Catalytic activityi

Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolase
Biological processtRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ribonuclease P/MRP protein subunit POP5 (EC:3.1.26.5)
Alternative name(s):
Protein EMBRYO DEFECTIVE 1687
Gene namesi
Name:EMB1687
Ordered Locus Names:At1g04635
ORF Names:T1G11.24
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G04635
TAIRilocus:504956160 AT1G04635

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001400131 – 151Probable ribonuclease P/MRP protein subunit POP5Add BLAST151

Proteomic databases

PaxDbiQ6AWV1
PRIDEiQ6AWV1

Expressioni

Gene expression databases

ExpressionAtlasiQ6AWV1 differential

Interactioni

Protein-protein interaction databases

BioGridi24695, 1 interactor
STRINGi3702.AT1G04635.1

Structurei

3D structure databases

ProteinModelPortaliQ6AWV1
SMRiQ6AWV1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG4639 Eukaryota
COG1369 LUCA
HOGENOMiHOG000006304
InParanoidiQ6AWV1
KOiK03537
OMAiRYIAVQI
OrthoDBiEOG09360R8F
PhylomeDBiQ6AWV1

Family and domain databases

Gene3Di3.30.70.3250, 1 hit
InterProiView protein in InterPro
IPR016819 RNase_P/MRP_POP5
IPR002759 RNase_P/MRP_subunit
IPR038085 Rnp2-like_sf
PfamiView protein in Pfam
PF01900 RNase_P_Rpp14, 1 hit
PIRSFiPIRSF023803 Ribonuclease_P_prd, 1 hit
SUPFAMiSSF160350 SSF160350, 1 hit

Sequencei

Sequence statusi: Complete.

Q6AWV1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVGFKNRYML MEVFLDPDKD LLGEGTPIIL TQFNLSKAIK DSILVNFGEC
60 70 80 90 100
GLGSSLGSFQ VKYVNPITKL CIVRSSREEH RQVWLAITLV KSIGNCPVIL
110 120 130 140 150
NLLDISGCIR ACRDTALKCD KEKFEQCSKS LSEEEIRQMN TSLEKIKLLE

N
Length:151
Mass (Da):17,017
Last modified:September 13, 2004 - v1
Checksum:i6EC227EF0C0116E9
GO

Sequence cautioni

The sequence AAB80636 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At1g04640 has been split into 2 genes: At1g04635 and At1g04640.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002376 Genomic DNA Translation: AAB80636.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE27725.1
BT015147 mRNA Translation: AAT85743.1
BT015896 mRNA Translation: AAU95432.1
PIRiB86179
RefSeqiNP_683274.1, NM_148433.3
UniGeneiAt.49851

Genome annotation databases

EnsemblPlantsiAT1G04635.1; AT1G04635.1; AT1G04635
GeneIDi839460
GrameneiAT1G04635.1; AT1G04635.1; AT1G04635
KEGGiath:AT1G04635

Similar proteinsi

Entry informationi

Entry nameiPOP5_ARATH
AccessioniPrimary (citable) accession number: Q6AWV1
Secondary accession number(s): O23021
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: September 13, 2004
Last modified: May 23, 2018
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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