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Q6AVZ9

- RPAP2_ORYSJ

UniProt

Q6AVZ9 - RPAP2_ORYSJ

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Protein

Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Gene
Os05g0134300, LOC_Os05g04370, OsJ_17019, P0519E07.4
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation By similarity.

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri43 – 13189RTR1-typeAdd
BLAST

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. phosphoprotein phosphatase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC:3.1.3.16)
Alternative name(s):
RNA polymerase II-associated protein 2 homolog
Gene namesi
Ordered Locus Names:Os05g0134300, LOC_Os05g04370
ORF Names:OsJ_17019, P0519E07.4
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 5

Organism-specific databases

GrameneiQ6AVZ9.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 726726Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homologPRO_0000416292Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the RPAP2 family.

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri43 – 13189RTR1-typeAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

OMAiWIGPSNA.

Family and domain databases

InterProiIPR007308. DUF408.
[Graphical view]
PfamiPF04181. RPAP2_Rtr1. 1 hit.
[Graphical view]
PROSITEiPS51479. ZF_RTR1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6AVZ9-1 [UniParc]FASTAAdd to Basket

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MGPTTATDTG ARMKPTTVAS AVHRVQMALY DGAAASREPL LRAAASLLSG    50
PDYADVVTER SIADACGYPA CPNPLPSEDA RGKAAPRFRI SLREHRVYDL 100
EEARKFCSER CLVASAAFGA SLPPDRPFGV SPDRLDALVA LFEGGGGGGD 150
DGGLALGFGA SGDGKEVEEG RKVEIMEKEA AGTGEVTLQE WIGPSDAIEG 200
YVPRRDRVVG GPKKEAKQND ACSAEQSSNI NVDSRNASSG ESGMVLTENT 250
KAKKKEATKT PLKMFKQDED NDMLSSCISD SIVKQLEDVV LEEKKDKKKN 300
KAAKGTSRVG KSKPAKRPVG RDGHEVDFTS TIIMGDRGSE MMDHGALGQY 350
NFSSSILANE QPSSSQYAAI DSVQAYTEEL DELFSNAVNI AKDETSDDSG 400
RCTLRSSLKA VGSKNAGHSV KWADENGSVL ETSRAFVSHS SKSQESMDSS 450
VRRESAEACA AALIEAAEAI SSGTSEVEDA VSKAGIIILP DMVNQQQYNN 500
DYDNDKDAGE NEIFEIDRGV VKWPKKTVLL DTDMFDVDDS WHDTPPEGFS 550
LTLSSFATMW AALFGWVSRS SLAYVYGLDE SSMEDLLIAG GRECPQKRVL 600
NDGHSSEIRR ALDTCVCNAL PVLVSNLRMQ IPVSKLEITL GYLLDTMSFV 650
DALPSLRSRQ WQLMVLVLLD ALSLHRLPAL APIMSDSKLL QKLLNSAQVS 700
REEYDSMIDL LLPFGRSTQS QASLPS 726
Length:726
Mass (Da):78,331
Last modified:September 13, 2004 - v1
Checksum:i4AF8D7356FB0361B
GO

Sequence cautioni

The sequence BAF16480.2 differs from that shown. Reason: Erroneous gene model prediction.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC087552 Genomic DNA. Translation: AAT94046.1.
AP008211 Genomic DNA. Translation: BAF16480.2. Sequence problems.
CM000142 Genomic DNA. Translation: EEE62232.1.
RefSeqiNP_001054566.2. NM_001061101.2.
UniGeneiOs.25245.

Genome annotation databases

EnsemblPlantsiOS05T0134300-01; OS05T0134300-01; OS05G0134300.
GeneIDi4337724.
KEGGiosa:4337724.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC087552 Genomic DNA. Translation: AAT94046.1 .
AP008211 Genomic DNA. Translation: BAF16480.2 . Sequence problems.
CM000142 Genomic DNA. Translation: EEE62232.1 .
RefSeqi NP_001054566.2. NM_001061101.2.
UniGenei Os.25245.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS05T0134300-01 ; OS05T0134300-01 ; OS05G0134300 .
GeneIDi 4337724.
KEGGi osa:4337724.

Organism-specific databases

Gramenei Q6AVZ9.

Phylogenomic databases

OMAi WIGPSNA.

Family and domain databases

InterProi IPR007308. DUF408.
[Graphical view ]
Pfami PF04181. RPAP2_Rtr1. 1 hit.
[Graphical view ]
PROSITEi PS51479. ZF_RTR1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.

Entry informationi

Entry nameiRPAP2_ORYSJ
AccessioniPrimary (citable) accession number: Q6AVZ9
Secondary accession number(s): Q0DKZ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 21, 2012
Last sequence update: September 13, 2004
Last modified: May 14, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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