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Protein

Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Gene

Os05g0134300

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation.By similarity

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi66ZincPROSITE-ProRule annotation1
Metal bindingi71ZincPROSITE-ProRule annotation1
Metal bindingi107ZincPROSITE-ProRule annotation1
Metal bindingi111ZincPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri43 – 131RTR1-typePROSITE-ProRule annotationAdd BLAST89

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC:3.1.3.16)
Alternative name(s):
RNA polymerase II-associated protein 2 homolog
Gene namesi
Ordered Locus Names:Os05g0134300, LOC_Os05g04370
ORF Names:OsJ_17019, P0519E07.4
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 5

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004162921 – 726Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homologAdd BLAST726

Proteomic databases

PaxDbiQ6AVZ9.

Expressioni

Gene expression databases

GenevisibleiQ6AVZ9. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g04370.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the RPAP2 family.Curated
Contains 1 RTR1-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri43 – 131RTR1-typePROSITE-ProRule annotationAdd BLAST89

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG4780. Eukaryota.
ENOG410ZZZC. LUCA.
InParanoidiQ6AVZ9.
KOiK20827.
OMAiNLRMQIP.
OrthoDBiEOG093604TT.

Family and domain databases

InterProiIPR007308. DUF408.
[Graphical view]
PfamiPF04181. RPAP2_Rtr1. 1 hit.
[Graphical view]
PROSITEiPS51479. ZF_RTR1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q6AVZ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGPTTATDTG ARMKPTTVAS AVHRVQMALY DGAAASREPL LRAAASLLSG
60 70 80 90 100
PDYADVVTER SIADACGYPA CPNPLPSEDA RGKAAPRFRI SLREHRVYDL
110 120 130 140 150
EEARKFCSER CLVASAAFGA SLPPDRPFGV SPDRLDALVA LFEGGGGGGD
160 170 180 190 200
DGGLALGFGA SGDGKEVEEG RKVEIMEKEA AGTGEVTLQE WIGPSDAIEG
210 220 230 240 250
YVPRRDRVVG GPKKEAKQND ACSAEQSSNI NVDSRNASSG ESGMVLTENT
260 270 280 290 300
KAKKKEATKT PLKMFKQDED NDMLSSCISD SIVKQLEDVV LEEKKDKKKN
310 320 330 340 350
KAAKGTSRVG KSKPAKRPVG RDGHEVDFTS TIIMGDRGSE MMDHGALGQY
360 370 380 390 400
NFSSSILANE QPSSSQYAAI DSVQAYTEEL DELFSNAVNI AKDETSDDSG
410 420 430 440 450
RCTLRSSLKA VGSKNAGHSV KWADENGSVL ETSRAFVSHS SKSQESMDSS
460 470 480 490 500
VRRESAEACA AALIEAAEAI SSGTSEVEDA VSKAGIIILP DMVNQQQYNN
510 520 530 540 550
DYDNDKDAGE NEIFEIDRGV VKWPKKTVLL DTDMFDVDDS WHDTPPEGFS
560 570 580 590 600
LTLSSFATMW AALFGWVSRS SLAYVYGLDE SSMEDLLIAG GRECPQKRVL
610 620 630 640 650
NDGHSSEIRR ALDTCVCNAL PVLVSNLRMQ IPVSKLEITL GYLLDTMSFV
660 670 680 690 700
DALPSLRSRQ WQLMVLVLLD ALSLHRLPAL APIMSDSKLL QKLLNSAQVS
710 720
REEYDSMIDL LLPFGRSTQS QASLPS
Length:726
Mass (Da):78,331
Last modified:September 13, 2004 - v1
Checksum:i4AF8D7356FB0361B
GO

Sequence cautioni

The sequence BAF16480 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC087552 Genomic DNA. Translation: AAT94046.1.
AP008211 Genomic DNA. Translation: BAF16480.2. Sequence problems.
AP014961 Genomic DNA. Translation: BAS92137.1.
CM000142 Genomic DNA. Translation: EEE62232.1.
RefSeqiXP_015640837.1. XM_015785351.1.
UniGeneiOs.25245.

Genome annotation databases

EnsemblPlantsiOS05T0134300-01; OS05T0134300-01; OS05G0134300.
GeneIDi4337724.
GrameneiOS05T0134300-01; OS05T0134300-01; OS05G0134300.
KEGGiosa:4337724.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC087552 Genomic DNA. Translation: AAT94046.1.
AP008211 Genomic DNA. Translation: BAF16480.2. Sequence problems.
AP014961 Genomic DNA. Translation: BAS92137.1.
CM000142 Genomic DNA. Translation: EEE62232.1.
RefSeqiXP_015640837.1. XM_015785351.1.
UniGeneiOs.25245.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os05g04370.1.

Proteomic databases

PaxDbiQ6AVZ9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS05T0134300-01; OS05T0134300-01; OS05G0134300.
GeneIDi4337724.
GrameneiOS05T0134300-01; OS05T0134300-01; OS05G0134300.
KEGGiosa:4337724.

Phylogenomic databases

eggNOGiKOG4780. Eukaryota.
ENOG410ZZZC. LUCA.
InParanoidiQ6AVZ9.
KOiK20827.
OMAiNLRMQIP.
OrthoDBiEOG093604TT.

Gene expression databases

GenevisibleiQ6AVZ9. OS.

Family and domain databases

InterProiIPR007308. DUF408.
[Graphical view]
PfamiPF04181. RPAP2_Rtr1. 1 hit.
[Graphical view]
PROSITEiPS51479. ZF_RTR1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRPAP2_ORYSJ
AccessioniPrimary (citable) accession number: Q6AVZ9
Secondary accession number(s): A0A0N7KK38, Q0DKZ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 21, 2012
Last sequence update: September 13, 2004
Last modified: November 30, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.