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Q6AVZ9

- RPAP2_ORYSJ

UniProt

Q6AVZ9 - RPAP2_ORYSJ

Protein

Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Gene

Os05g0134300

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (13 Sep 2004)
      Previous versions | rss
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    Functioni

    Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation.By similarity

    Catalytic activityi

    [a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri43 – 13189RTR1-typeAdd
    BLAST

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. phosphoprotein phosphatase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase, Protein phosphatase

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC:3.1.3.16)
    Alternative name(s):
    RNA polymerase II-associated protein 2 homolog
    Gene namesi
    Ordered Locus Names:Os05g0134300, LOC_Os05g04370
    ORF Names:OsJ_17019, P0519E07.4
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 5

    Organism-specific databases

    GrameneiQ6AVZ9.

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 726726Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homologPRO_0000416292Add
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RPAP2 family.Curated
    Contains 1 RTR1-type zinc finger.Curated

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri43 – 13189RTR1-typeAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    OMAiWIGPSNA.

    Family and domain databases

    InterProiIPR007308. DUF408.
    [Graphical view]
    PfamiPF04181. RPAP2_Rtr1. 1 hit.
    [Graphical view]
    PROSITEiPS51479. ZF_RTR1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q6AVZ9-1 [UniParc]FASTAAdd to Basket

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    MGPTTATDTG ARMKPTTVAS AVHRVQMALY DGAAASREPL LRAAASLLSG    50
    PDYADVVTER SIADACGYPA CPNPLPSEDA RGKAAPRFRI SLREHRVYDL 100
    EEARKFCSER CLVASAAFGA SLPPDRPFGV SPDRLDALVA LFEGGGGGGD 150
    DGGLALGFGA SGDGKEVEEG RKVEIMEKEA AGTGEVTLQE WIGPSDAIEG 200
    YVPRRDRVVG GPKKEAKQND ACSAEQSSNI NVDSRNASSG ESGMVLTENT 250
    KAKKKEATKT PLKMFKQDED NDMLSSCISD SIVKQLEDVV LEEKKDKKKN 300
    KAAKGTSRVG KSKPAKRPVG RDGHEVDFTS TIIMGDRGSE MMDHGALGQY 350
    NFSSSILANE QPSSSQYAAI DSVQAYTEEL DELFSNAVNI AKDETSDDSG 400
    RCTLRSSLKA VGSKNAGHSV KWADENGSVL ETSRAFVSHS SKSQESMDSS 450
    VRRESAEACA AALIEAAEAI SSGTSEVEDA VSKAGIIILP DMVNQQQYNN 500
    DYDNDKDAGE NEIFEIDRGV VKWPKKTVLL DTDMFDVDDS WHDTPPEGFS 550
    LTLSSFATMW AALFGWVSRS SLAYVYGLDE SSMEDLLIAG GRECPQKRVL 600
    NDGHSSEIRR ALDTCVCNAL PVLVSNLRMQ IPVSKLEITL GYLLDTMSFV 650
    DALPSLRSRQ WQLMVLVLLD ALSLHRLPAL APIMSDSKLL QKLLNSAQVS 700
    REEYDSMIDL LLPFGRSTQS QASLPS 726
    Length:726
    Mass (Da):78,331
    Last modified:September 13, 2004 - v1
    Checksum:i4AF8D7356FB0361B
    GO

    Sequence cautioni

    The sequence BAF16480.2 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC087552 Genomic DNA. Translation: AAT94046.1.
    AP008211 Genomic DNA. Translation: BAF16480.2. Sequence problems.
    CM000142 Genomic DNA. Translation: EEE62232.1.
    RefSeqiNP_001054566.2. NM_001061101.2.
    UniGeneiOs.25245.

    Genome annotation databases

    EnsemblPlantsiOS05T0134300-01; OS05T0134300-01; OS05G0134300.
    GeneIDi4337724.
    KEGGiosa:4337724.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC087552 Genomic DNA. Translation: AAT94046.1 .
    AP008211 Genomic DNA. Translation: BAF16480.2 . Sequence problems.
    CM000142 Genomic DNA. Translation: EEE62232.1 .
    RefSeqi NP_001054566.2. NM_001061101.2.
    UniGenei Os.25245.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS05T0134300-01 ; OS05T0134300-01 ; OS05G0134300 .
    GeneIDi 4337724.
    KEGGi osa:4337724.

    Organism-specific databases

    Gramenei Q6AVZ9.

    Phylogenomic databases

    OMAi WIGPSNA.

    Family and domain databases

    InterProi IPR007308. DUF408.
    [Graphical view ]
    Pfami PF04181. RPAP2_Rtr1. 1 hit.
    [Graphical view ]
    PROSITEi PS51479. ZF_RTR1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiRPAP2_ORYSJ
    AccessioniPrimary (citable) accession number: Q6AVZ9
    Secondary accession number(s): Q0DKZ3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 21, 2012
    Last sequence update: September 13, 2004
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3