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Protein

Glutamate decarboxylase

Gene

B1377B10.13

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Name:B1377B10.13Imported
Synonyms:Os03g0720300Imported
Ordered Locus Names:LOC_Os03g51080Imported
ORF Names:OSNPB_030720300Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 3

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei277 – 2771N6-(pyridoxal phosphate)lysineUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os03g51080.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076. LUCA.
KOG1383. Eukaryota.
KOiK01580.
OMAiNTIGICS.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q6ASV4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLSHGVSGS DESVHSTFAS RYVRTSLPRF RMPEQSIPKE AAYQIINDEL
60 70 80 90 100
MLDGNPRLNL ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC
110 120 130 140 150
VNMIAHLFNA PLGDSETAVG VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK
160 170 180 190 200
PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLSDGYYVM DPAKAVDMVD
210 220 230 240 250
ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP IHVDAASGGF
260 270 280 290 300
IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RSKEDLPEEL
310 320 330 340 350
IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN
360 370 380 390 400
AMVLKQGLEK TGRFNIVSKD NGVPLVAFSL KDSARHNEFE ISDFLRRFGW
410 420 430 440 450
IVPAYTMPPD AQHVTVLRVV IREDFSRTLA ERLVLDVEKV LHELDALPAR
460 470 480 490
VVANGGDAAA ASASEREMEK QREVISLWKR AVLAKKKTNG VC
Length:492
Mass (Da):55,066
Last modified:September 13, 2004 - v1
Checksum:iDB971984BFA1A8E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC147426 Genomic DNA. Translation: AAT77842.1.
DP000009 Genomic DNA. Translation: ABF98584.1.
AP008209 Genomic DNA. Translation: BAF13013.1.
AP014959 Genomic DNA. Translation: BAS86118.1.
RefSeqiNP_001051099.1. NM_001057634.1.
UniGeneiOs.17946.

Genome annotation databases

EnsemblPlantsiOS03T0720300-01; OS03T0720300-01; OS03G0720300.
GeneIDi4333932.
KEGGiosa:4333932.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC147426 Genomic DNA. Translation: AAT77842.1.
DP000009 Genomic DNA. Translation: ABF98584.1.
AP008209 Genomic DNA. Translation: BAF13013.1.
AP014959 Genomic DNA. Translation: BAS86118.1.
RefSeqiNP_001051099.1. NM_001057634.1.
UniGeneiOs.17946.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os03g51080.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0720300-01; OS03T0720300-01; OS03G0720300.
GeneIDi4333932.
KEGGiosa:4333932.

Phylogenomic databases

eggNOGiCOG0076. LUCA.
KOG1383. Eukaryota.
KOiK01580.
OMAiNTIGICS.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. Buell R.
    Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The map-based sequence of the rice genome."
    International Rice Genome Sequencing Project
    Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.
    , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
    Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  5. Buell R., Wing R.A., McCombie W.A., Ouyang S.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. NipponbareImported.
  7. "Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics."
    Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.
    Plant Cell Physiol. 54:E6-E6(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  8. "Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data."
    Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H., Lee S.S., Kim J.
    , Numa H., Itoh T., Buell C.R., Matsumoto T.
    Rice 6:4-4(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  9. Millard Andrew
    Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ6ASV4_ORYSJ
AccessioniPrimary (citable) accession number: Q6ASV4
Entry historyi
Integrated into UniProtKB/TrEMBL: September 13, 2004
Last sequence update: September 13, 2004
Last modified: January 20, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.