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Q6A7S6 (RIMM_PROAC) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosome maturation factor rimM
Gene names
Name:rimM
Ordered Locus Names:PPA1441
OrganismPropionibacterium acnes (strain KPA171202 / DSM 16379) [Complete proteome] [HAMAP]
Taxonomic identifier267747 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Propionibacterineae › Propionibacteriaceae › Propionibacterium

Protein attributes

Sequence length179 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP MF_00014

Subcellular location

Cytoplasm By similarity HAMAP MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP MF_00014

Sequence similarities

Belongs to the rimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processrRNA processing

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 179179Ribosome maturation factor rimM HAMAP MF_00014
PRO_0000163331

Regions

Domain98 – 17073PRC barrel

Sequences

Sequence LengthMass (Da)Tools
Q6A7S6 [UniParc].

Last modified September 13, 2004. Version 1.
Checksum: 5C7BD94D5836B749

FASTA17919,440
        10         20         30         40         50         60 
MEESATVEVV VGRVGRAHGL RGDVVVEVRT DEPDARFGVG ATVQIEGSRR DLTVVRSRWA 

        70         80         90        100        110        120 
KGCLIVAFDE VKDRQGAEEL RGSVLVVDVE PNDDPDDPDE FWDRRLRGLT VVDESGKSRG 

       130        140        150        160        170 
AVKDVLHMPA QDVLVIDVSG EEHLVPFVHQ LVPTVDVASG RIVVSGIPGL LDSNAEEAR

« Hide

References

[1]"The complete genome sequence of Propionibacterium acnes, a commensal of human skin."
Brueggemann H., Henne A., Hoster F., Liesegang H., Wiezer A., Strittmatter A., Hujer S., Duerre P., Gottschalk G.
Science 305:671-673(2004) [PubMed: 15286373] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KPA171202 / DSM 16379.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017283 Genomic DNA. Translation: AAT83189.1.
RefSeqYP_056147.1. NC_006085.1.

3D structure databases

ProteinModelPortalQ6A7S6.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID2931821.
GenomeReviewsGene locus PPA1441 in contig AE017283_GR.
KEGGpac:PPA1441.
NMPDRfig|267747.1.peg.1424.
PATRIC23037651. VBIProAcn64440_1484.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG703775.
OMADEEDAWY.
PhylomeDBQ6A7S6.
ProtClustDBCLSK2763980.

Enzyme and pathway databases

BioCycPACN267747:PPA1441-MONOMER.

Family and domain databases

HAMAPMF_00014. Ribosome_mat_RimM.
[Tree]
InterProIPR011961. 16S_RimM.
IPR007903. PRC_barrel.
IPR011033. PRC_barrell-like.
IPR002676. RimM.
IPR009000. Transl_elong_init/rib_B-barrel.
[Graphical view]
Gene3DG3DSA:2.40.30.60. G3DSA:2.40.30.60. 1 hit.
KOK02860.
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. PRCH_cytoplasmic. 1 hit.
SSF50447. Translat_factor. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_PROAC
AccessionPrimary (citable) accession number: Q6A7S6
Entry history
Integrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: September 13, 2004
Last modified: January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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