Q69ZA1 (CDK13_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 92.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Cyclin-dependent kinase 13 EC=2.7.11.22 EC=2.7.11.23 Alternative name(s): CDC2-related protein kinase 5 Cell division cycle 2-like protein kinase 5 Cell division protein kinase 13 | ||||
| Gene names |
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| Organism | Mus musculus (Mouse) [Reference proteome] | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 1511 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Cyclin-dependent kinase which displays CTD kinase activity and is required for RNA splicing. Has CTD kinase activity by hyperphosphorylating the C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit RPB1, thereby acting as a key regulator of transcription elongation. Required for RNA splicing, probably by phosphorylating SRSF1/SF2. Required during hematopoiesis. Ref.7 |
| Catalytic activity | ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate. ATP + a protein = ADP + a phosphoprotein. |
| Subunit structure | Interacts with C1QBP By similarity. Interacts with CCNL1 and CCNL2. Ref.7 |
| Subcellular location | Nucleus speckle By similarity. |
| Sequence similarities | Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. Contains 1 protein kinase domain. |
| Sequence caution | The sequence AAH32179.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence BAC29077.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC29077.1 differs from that shown. Reason: Frameshift at positions 633 and 666. The sequence BAD32543.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q69ZA1-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q69ZA1-2) The sequence of this isoform differs from the canonical sequence as follows: 1079-1138: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1511 | 1511 | Cyclin-dependent kinase 13 | PRO_0000085712 | |||||
Regions | |||||||||
| Domain | 705 – 998 | 294 | Protein kinase | ||||||
| Nucleotide binding | 711 – 719 | 9 | ATP By similarity | ||||||
Sites | |||||||||
| Active site | 837 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 734 | 1 | ATP By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 316 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 318 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 326 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 341 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 343 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 384 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 396 | 1 | Phosphoserine Ref.5 Ref.6 | ||||||
| Modified residue | 398 | 1 | Phosphoserine Ref.5 Ref.6 | ||||||
| Modified residue | 401 | 1 | Phosphoserine Ref.5 Ref.6 | ||||||
| Modified residue | 410 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 437 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 438 | 1 | Phosphoserine Ref.5 Ref.6 | ||||||
| Modified residue | 440 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 526 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 557 | 1 | N6-acetyllysine By similarity | ||||||
| Modified residue | 871 | 1 | Phosphothreonine Ref.6 | ||||||
| Modified residue | 1048 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 1245 | 1 | Phosphothreonine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1079 – 1138 | 60 | Missing in isoform 2. | VSP_013580 | |||||
Experimental info | |||||||||
| Sequence conflict | 73 | 1 | A → V in BAD32543. Ref.1 | ||||||
| Sequence conflict | 103 | 1 | Q → R in BAD32543. Ref.1 | ||||||
| Sequence conflict | 637 | 1 | E → K in BAC29077. Ref.3 | ||||||
| Sequence conflict | 1009 | 1 | P → L in BAD32543. Ref.1 | ||||||
| Sequence conflict | 1206 | 1 | E → K in AAH32179. Ref.4 | ||||||
| Sequence conflict | 1400 | 1 | A → P in AAH51093. Ref.4 | ||||||
| Sequence conflict | 1464 | 1 | N → D in BAC29077. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries." Okazaki N., Kikuno R., Ohara R., Inamoto S., Koseki H., Hiraoka S., Saga Y., Seino S., Nishimura M., Kaisho T., Hoshino K., Kitamura H., Nagase T., Ohara O., Koga H. DNA Res. 11:205-218(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Embryonic tail. |
| [2] | "Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. Ponting C.P.PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J. |
| [3] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 295-1511 (ISOFORM 1). Strain: C57BL/6J. Tissue: Urinary bladder. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 891-1511 (ISOFORMS 1 AND 2). Strain: FVB/N. Tissue: Mammary tumor. |
| [5] | "Large-scale phosphorylation analysis of mouse liver." Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-384; SER-396; SER-398; SER-401; SER-437 AND SER-438, MASS SPECTROMETRY. Tissue: Liver. |
| [6] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-326; SER-396; SER-398; SER-401; SER-410; SER-438 AND THR-871, MASS SPECTROMETRY. Tissue: Melanoma. |
| [7] | "CDK13/CDC2L5 interacts with L-type cyclins and regulates alternative splicing." Chen H.H., Wong Y.H., Geneviere A.M., Fann M.J. Biochem. Biophys. Res. Commun. 354:735-740(2007) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH CCNL1 AND CCNL2. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK173265 mRNA. Translation: BAD32543.1. Different initiation. AC154219 Genomic DNA. No translation available. AC154828 Genomic DNA. No translation available. AK035493 mRNA. Translation: BAC29077.1. Sequence problems. BC032179 mRNA. Translation: AAH32179.1. Different initiation. BC051093 mRNA. Translation: AAH51093.1. |
| IPI | IPI00464128. IPI01008538. |
| RefSeq | NP_001074527.1. NM_001081058.2. NP_081394.1. NM_027118.1. |
| UniGene | Mm.193924. |
3D structure databases | |
| ProteinModelPortal | Q69ZA1. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 10090.ENSMUSP00000036013. |
PTM databases | |
| PhosphoSite | Q69ZA1. |
Proteomic databases | |
| PaxDb | Q69ZA1. |
| PRIDE | Q69ZA1. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000042365; ENSMUSP00000036013; ENSMUSG00000041297. |
| GeneID | 69562. |
| KEGG | mmu:69562. |
| UCSC | uc007poc.2. mouse. uc007pod.2. mouse. |
Organism-specific databases | |
| CTD | 8621. |
| MGI | MGI:1916812. Cdk13. |
| Rouge | Search... |
Phylogenomic databases | |
| eggNOG | COG0515. |
| GeneTree | ENSGT00690000102025. |
| HOGENOM | HOG000049118. |
| HOVERGEN | HBG050851. |
| InParanoid | Q69ZA1. |
| KO | K08819. |
| OMA | KERHREH. |
| OrthoDB | EOG4TTGH6. |
Gene expression databases | |
| ArrayExpress | Q69ZA1. |
| Bgee | Q69ZA1. |
| Genevestigator | Q69ZA1. |
| GermOnline | ENSMUSG00000041297. Mus musculus. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR002290. Ser/Thr_dual-sp_kinase_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] |
| Pfam | PF00069. Pkinase. 1 hit. [Graphical view] |
| SMART | SM00220. S_TKc. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. |
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 329780. |
| SOURCE | Search... |
Entry information
| Entry name | CDK13_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q69ZA1 Secondary accession number(s): E9QKZ6 Q8K0A4 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
