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Protein

Protein VP2

Gene

ORF2

Organism
Sapporo virus (strain Human/United Kingdom/Manchester/1993) (Hu/SV/Man/1993/UK)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be a minor structural protein present in one or two copies per virion. May play a role in RNA genome packaging (By similarity).By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene namesi
ORF Names:ORF2
OrganismiSapporo virus (strain Human/United Kingdom/Manchester/1993) (Hu/SV/Man/1993/UK)
Taxonomic identifieri82659 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host cytoplasm, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 165165Protein VP2PRO_0000341652Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the sapovirus VP2 family.Curated

Family and domain databases

InterProiIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamiPF05752. Calici_MSP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q69016-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWLVGALQT FGSLADVAGT VSNIVYQQRQ AAQLEKQNEL METWMNKQEA
60 70 80 90 100
LQKSQMELTR DLSINGPAAR VQSALDAGFD EVSARRIAGS GERVIWGNLD
110 120 130 140 150
RPIMHAGTMD SIRQTKHLDS LSHSLATFKN GTPFGKPAPP TTKFGKPQAT
160
TAQINIGHNP GSSSV
Length:165
Mass (Da):17,847
Last modified:November 1, 1996 - v1
Checksum:i7C3DF91B35AADA6B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X86560 Genomic RNA. Translation: CAA60261.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X86560 Genomic RNA. Translation: CAA60261.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamiPF05752. Calici_MSP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses."
    Liu B.L., Clarke I.N., Caul E.O., Lambden P.R.
    Arch. Virol. 140:1345-1356(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiVP2_SVM93
AccessioniPrimary (citable) accession number: Q69016
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: November 1, 1996
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

Translated by a ribosomal termination-reinitiation process from the bicistronic genomic RNA.

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.