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Q69016 (VP2_SVM93) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF2
OrganismSapporo virus (strain Human/United Kingdom/Manchester/1993) (Hu/SV/Man/1993/UK)
Taxonomic identifier82659 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length165 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

May be a minor structural protein present in one or two copies per virion. May play a role in RNA genome packaging By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal termination-reinitiation process from the bicistronic genomic RNA.

Sequence similarities

Belongs to the sapovirus VP2 family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 165165Protein VP2
PRO_0000341652

Sequences

Sequence LengthMass (Da)Tools
Q69016 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 7C3DF91B35AADA6B

FASTA16517,847
        10         20         30         40         50         60 
MSWLVGALQT FGSLADVAGT VSNIVYQQRQ AAQLEKQNEL METWMNKQEA LQKSQMELTR 

        70         80         90        100        110        120 
DLSINGPAAR VQSALDAGFD EVSARRIAGS GERVIWGNLD RPIMHAGTMD SIRQTKHLDS 

       130        140        150        160 
LSHSLATFKN GTPFGKPAPP TTKFGKPQAT TAQINIGHNP GSSSV 

« Hide

References

[1]"Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses."
Liu B.L., Clarke I.N., Caul E.O., Lambden P.R.
Arch. Virol. 140:1345-1356(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X86560 Genomic RNA. Translation: CAA60261.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR008437. Minor_structural_calicivir.
[Graphical view]
PfamPF05752. Calici_MSP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_SVM93
AccessionPrimary (citable) accession number: Q69016
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: November 1, 1996
Last modified: April 3, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families