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Q69015 (VP3_SVM93) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein VP3
Gene names
ORF Names:ORF3
OrganismSapporo virus (strain Human/United Kingdom/Manchester/1993) (Hu/SV/Man/1993/UK)
Taxonomic identifier82659 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeSapovirus
Virus hostHomo sapiens (Human) [TaxID: 9606]

Protein attributes

Sequence length161 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the sapovirus VP3 family.

Ontologies

Keywords
   Coding sequence diversityAlternative initiation
Gene Ontology (GO)
None. [Check GOA]

Alternative products

This entry describes 2 isoforms produced by alternative initiation. [Align] [Select]
Isoform Uncharacterized protein VP3 (identifier: Q69015-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Note: Produced by alternative initiation from the subgenomic RNA.
Isoform Subgenomic capsid protein (identifier: Q69014-2)

Also known as: VP1;

The sequence of this isoform can be found in the external entry Q69014.
Isoforms of the same protein are often annotated in two different entries if their sequences differ significantly.
Note: Produced from the subgenomic RNA.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 161161Uncharacterized protein VP3
PRO_0000341653

Sequences

Sequence LengthMass (Da)Tools
Isoform Uncharacterized protein VP3 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 73081E070940C8A8

FASTA16117,469
        10         20         30         40         50         60 
MAPTQSQSKA TTQWSLTRLA QQVRPHPTLL LLIRSNPMGP HSAWSWLLPL VQSNPMSLRQ 

        70         80         90        100        110        120 
YATALQSFVL LLGTTGCPRE LFLDLYRFIP TLTRTLLTSL GCGPGGAVVL RSGYRSLVLA 

       130        140        150        160 
CSLGASLLLS YHQGLIPRPS GTQACCLTLS LMLASLSQFL S 

« Hide

Isoform Subgenomic capsid protein (VP1) [UniParc].

See Q69014.

References

[1]"Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses."
Liu B.L., Clarke I.N., Caul E.O., Lambden P.R.
Arch. Virol. 140:1345-1356(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
X86560 Genomic RNA. Translation: CAA60260.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR009949. Sapovirus_VP3.
[Graphical view]
PfamPF07349. DUF1478. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP3_SVM93
AccessionPrimary (citable) accession number: Q69015
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: November 1, 1996
Last modified: April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families