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Protein

Ferredoxin

Gene

fdxA

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.By similarity

Cofactori

Protein has several cofactor binding sites:

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi9 – 91Iron-sulfur 1 (3Fe-4S)By similarity
Metal bindingi17 – 171Iron-sulfur 1 (3Fe-4S)By similarity
Metal bindingi21 – 211Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi40 – 401Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi43 – 431Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi46 – 461Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi50 – 501Iron-sulfur 1 (3Fe-4S)By similarity

GO - Molecular functioni

  1. 3 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  2. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  3. electron carrier activity Source: InterPro
  4. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. oxidation-reduction process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

3Fe-4S, 4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-857-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin
Gene namesi
Name:fdxA
Ordered Locus Names:RT0817
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 110109FerredoxinPRO_0000280965Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257363.RT0817.

Structurei

3D structure databases

ProteinModelPortaliQ68Y04.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 30294Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini31 – 60304Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG1146.
HOGENOMiHOG000044610.
KOiK05524.
OMAiANQIAFI.
OrthoDBiEOG6CVV7G.

Family and domain databases

InterProiIPR001450. 4Fe4S-bd_dom.
IPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR000813. 7Fe_ferredoxin.
IPR022569. Fd_C.
[Graphical view]
PfamiPF11953. DUF3470. 1 hit.
PF00037. Fer4. 1 hit.
[Graphical view]
PRINTSiPR00354. 7FE8SFRDOXIN.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q68Y04-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTYIVTDECV KCKYTDCVEV CPVDCFYEGE FMLVINPDEC IDCGVCVPDC
60 70 80 90 100
PIDAIKPESP ELIEWVERAK DFIENQGWKN ITKKKCALPD ADKFKDEQDK
110
FNKYIIKNMH
Length:110
Mass (Da):12,782
Last modified:October 11, 2004 - v1
Checksum:i8B211DA324280544
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU04272.1.
RefSeqiYP_067754.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU04272; AAU04272; RT0817.
GeneIDi2958963.
KEGGirty:RT0817.
PATRICi17910884. VBIRicTyp34752_0834.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU04272.1.
RefSeqiYP_067754.1. NC_006142.1.

3D structure databases

ProteinModelPortaliQ68Y04.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257363.RT0817.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAU04272; AAU04272; RT0817.
GeneIDi2958963.
KEGGirty:RT0817.
PATRICi17910884. VBIRicTyp34752_0834.

Phylogenomic databases

eggNOGiCOG1146.
HOGENOMiHOG000044610.
KOiK05524.
OMAiANQIAFI.
OrthoDBiEOG6CVV7G.

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-857-MONOMER.

Family and domain databases

InterProiIPR001450. 4Fe4S-bd_dom.
IPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR000813. 7Fe_ferredoxin.
IPR022569. Fd_C.
[Graphical view]
PfamiPF11953. DUF3470. 1 hit.
PF00037. Fer4. 1 hit.
[Graphical view]
PRINTSiPR00354. 7FE8SFRDOXIN.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiFER_RICTY
AccessioniPrimary (citable) accession number: Q68Y04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: October 11, 2004
Last modified: January 7, 2015
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.