Q68Y04 (FER_RICTY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ferredoxin

Gene names

Name:	fdxA
Ordered Locus Names:	RT0817

Organism

Rickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]

Taxonomic identifier

257363 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › typhus group › Rickettsia typhi

Protein attributes

Sequence length	110 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions By similarity.
Cofactor	Binds 1 4Fe-4S cluster By similarity. Binds 1 3Fe-4S cluster By similarity.
Sequence similarities	Contains 2 4Fe-4S ferredoxin-type domains.

Ontologies

Keywords
Biological process	Electron transport Transport
Domain	Repeat
Ligand	3Fe-4S 4Fe-4S Iron Iron-sulfur Metal-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	3 iron, 4 sulfur cluster binding Inferred from electronic annotation. Source: UniProtKB-KW 4 iron, 4 sulfur cluster binding Inferred from electronic annotation. Source: UniProtKB-KW electron carrier activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Initiator methionine	1	1	Removed By similarity
	Chain	2 – 110	109	Ferredoxin		PRO_0000280965
Regions
	Domain	2 – 30	29	4Fe-4S ferredoxin-type 1
	Domain	31 – 60	30	4Fe-4S ferredoxin-type 2
Sites
	Metal binding	9	1	Iron-sulfur 1 (3Fe-4S) By similarity
	Metal binding	17	1	Iron-sulfur 1 (3Fe-4S) By similarity
	Metal binding	21	1	Iron-sulfur 2 (4Fe-4S) By similarity
	Metal binding	40	1	Iron-sulfur 2 (4Fe-4S) By similarity
	Metal binding	43	1	Iron-sulfur 2 (4Fe-4S) By similarity
	Metal binding	46	1	Iron-sulfur 2 (4Fe-4S) By similarity
	Metal binding	50	1	Iron-sulfur 1 (3Fe-4S) By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q68Y04 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: 8B211DA324280544	FASTA	110	12,782
	10 20 30 40 50 60 MTYIVTDECV KCKYTDCVEV CPVDCFYEGE FMLVINPDEC IDCGVCVPDC PIDAIKPESP 70 80 90 100 110 ELIEWVERAK DFIENQGWKN ITKKKCALPD ADKFKDEQDK FNKYIIKNMH

References

[1]

"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae." McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. , Hong C., Yu X.-J., Walker D.H., Weinstock G.M. J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE017197 Genomic DNA. Translation: AAU04272.1.
RefSeq	YP_067754.1. NC_006142.1.
3D structure databases
HSSP	HSSP built from PDB template 1FRH based on UniProtKB P00214.
ProteinModelPortal	Q68Y04.
ModBase	Search...
Protein-protein interaction databases
STRING	257363.RT0817.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAU04272; AAU04272; RT0817.
GeneID	2958963.
KEGG	rty:RT0817.
PATRIC	17910884. VBIRicTyp34752_0834.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1146.
HOGENOM	HOG000044610.
KO	K05524.
OMA	SPELIEW.
ProtClustDB	CLSK871100.
Enzyme and pathway databases
BioCyc	RTYP257363:GJEQ-857-MONOMER.
Family and domain databases
Gene3D	1.10.1060.10. 1 hit.
InterPro	IPR001450. 4Fe4S-bd_dom. IPR017896. 4Fe4S_Fe-S-bd. IPR017900. 4Fe4S_Fe_S_CS. IPR000813. 7Fe_ferredoxin. IPR022569. Fd_C. IPR012285. Fum_reductase_C. [Graphical view]
Pfam	PF11953. DUF3470. 1 hit. PF00037. Fer4. 1 hit. [Graphical view]
PRINTS	PR00354. 7FE8SFRDOXIN.
PROSITE	PS00198. 4FE4S_FER_1. 1 hit. PS51379. 4FE4S_FER_2. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

FER_RICTY

Accession

Primary (citable) accession number: Q68Y04

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 20, 2007
Last sequence update:	October 11, 2004
Last modified:	May 1, 2013
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program