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Q68Y04 (FER_RICTY) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ferredoxin
Gene names
Name:fdxA
Ordered Locus Names:RT0817
OrganismRickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]
Taxonomic identifier257363 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length110 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions By similarity.

Cofactor

Binds 1 4Fe-4S cluster By similarity.

Binds 1 3Fe-4S cluster By similarity.

Sequence similarities

Contains 2 4Fe-4S ferredoxin-type domains.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 110109Ferredoxin
PRO_0000280965

Regions

Domain2 – 30294Fe-4S ferredoxin-type 1
Domain31 – 60304Fe-4S ferredoxin-type 2

Sites

Metal binding91Iron-sulfur 1 (3Fe-4S) By similarity
Metal binding171Iron-sulfur 1 (3Fe-4S) By similarity
Metal binding211Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding401Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding431Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding461Iron-sulfur 2 (4Fe-4S) By similarity
Metal binding501Iron-sulfur 1 (3Fe-4S) By similarity

Sequences

Sequence LengthMass (Da)Tools
Q68Y04 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 8B211DA324280544

FASTA11012,782
        10         20         30         40         50         60 
MTYIVTDECV KCKYTDCVEV CPVDCFYEGE FMLVINPDEC IDCGVCVPDC PIDAIKPESP 

        70         80         90        100        110 
ELIEWVERAK DFIENQGWKN ITKKKCALPD ADKFKDEQDK FNKYIIKNMH 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017197 Genomic DNA. Translation: AAU04272.1.
RefSeqYP_067754.1. NC_006142.1.

3D structure databases

ProteinModelPortalQ68Y04.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING257363.RT0817.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU04272; AAU04272; RT0817.
GeneID2958963.
KEGGrty:RT0817.
PATRIC17910884. VBIRicTyp34752_0834.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1146.
HOGENOMHOG000044610.
KOK05524.
OMACEKKINI.
OrthoDBEOG6CVV7G.

Enzyme and pathway databases

BioCycRTYP257363:GJEQ-857-MONOMER.

Family and domain databases

InterProIPR001450. 4Fe4S-bd_dom.
IPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR000813. 7Fe_ferredoxin.
IPR022569. Fd_C.
[Graphical view]
PfamPF11953. DUF3470. 1 hit.
PF00037. Fer4. 1 hit.
[Graphical view]
PRINTSPR00354. 7FE8SFRDOXIN.
PROSITEPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameFER_RICTY
AccessionPrimary (citable) accession number: Q68Y04
Entry history
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: October 11, 2004
Last modified: May 14, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names