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Protein

Probable ABC transporter permease protein RT0041

Gene

RT0041

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be part of an ABC transporter complex.By similarity

GO - Biological processi

  1. transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-43-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ABC transporter permease protein RT0041
Gene namesi
Ordered Locus Names:RT0041
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4021HelicalSequence AnalysisAdd
BLAST
Transmembranei49 – 6921HelicalSequence AnalysisAdd
BLAST
Transmembranei148 – 16821HelicalSequence AnalysisAdd
BLAST
Transmembranei195 – 21521HelicalSequence AnalysisAdd
BLAST
Transmembranei237 – 25721HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 259259Probable ABC transporter permease protein RT0041PRO_0000272625Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257363.RT0041.

Family & Domainsi

Sequence similaritiesi

Belongs to the MlaE permease family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0767.
HOGENOMiHOG000255132.
KOiK02066.
OMAiLMEAGPG.
OrthoDBiEOG6RJV8Q.

Family and domain databases

InterProiIPR003453. Permease.
[Graphical view]
PfamiPF02405. Permease. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00056. TIGR00056. 1 hit.

Sequencei

Sequence statusi: Complete.

Q68XW4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLNIANLVG KHTIKFAQSV GIFALFSFIA ISSIIKPPLY LSLIMRQLLF
60 70 80 90 100
IGFHSLPVVA MTTFFSGAVL ALQSYTGFSR FSAENSIATV VVLSLTRELG
110 120 130 140 150
PVLAGLIVAG RVGASIAAEI ATMKVTEQVD ALYTLSTDPI KYLVCPRVIA
160 170 180 190 200
AIITMPCLVL IGDVIGVMGG YLVGIYKLNF NSTAYLTSTF QYLELIDVIS
210 220 230 240 250
GLVKATVFGF IISIISCYSG YYSGKGAKGV GRATTSAVVN SSILILISNY

LITELLFKV
Length:259
Mass (Da):27,664
Last modified:October 11, 2004 - v1
Checksum:i316024E0C9D6DAF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03528.1.
RefSeqiYP_067010.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU03528; AAU03528; RT0041.
GeneIDi2959349.
KEGGirty:RT0041.
PATRICi17909232. VBIRicTyp34752_0038.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03528.1.
RefSeqiYP_067010.1. NC_006142.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257363.RT0041.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAU03528; AAU03528; RT0041.
GeneIDi2959349.
KEGGirty:RT0041.
PATRICi17909232. VBIRicTyp34752_0038.

Phylogenomic databases

eggNOGiCOG0767.
HOGENOMiHOG000255132.
KOiK02066.
OMAiLMEAGPG.
OrthoDBiEOG6RJV8Q.

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-43-MONOMER.

Family and domain databases

InterProiIPR003453. Permease.
[Graphical view]
PfamiPF02405. Permease. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00056. TIGR00056. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiY041_RICTY
AccessioniPrimary (citable) accession number: Q68XW4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: October 11, 2004
Last modified: January 7, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.