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Q68XW4 (Y041_RICTY) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable ABC transporter permease protein RT0041
Gene names
Ordered Locus Names:RT0041
OrganismRickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]
Taxonomic identifier257363 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length259 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Could be part of an ABC transporter complex By similarity.

Subcellular location

Cell inner membrane; Multi-pass membrane protein By similarity.

Sequence similarities

Belongs to the MlaE permease family.

Ontologies

Keywords
   Biological processTransport
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtransport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 259259Probable ABC transporter permease protein RT0041
PRO_0000272625

Regions

Transmembrane20 – 4021Helical; Potential
Transmembrane49 – 6921Helical; Potential
Transmembrane148 – 16821Helical; Potential
Transmembrane195 – 21521Helical; Potential
Transmembrane237 – 25721Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
Q68XW4 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 316024E0C9D6DAF9

FASTA25927,664
        10         20         30         40         50         60 
MLLNIANLVG KHTIKFAQSV GIFALFSFIA ISSIIKPPLY LSLIMRQLLF IGFHSLPVVA 

        70         80         90        100        110        120 
MTTFFSGAVL ALQSYTGFSR FSAENSIATV VVLSLTRELG PVLAGLIVAG RVGASIAAEI 

       130        140        150        160        170        180 
ATMKVTEQVD ALYTLSTDPI KYLVCPRVIA AIITMPCLVL IGDVIGVMGG YLVGIYKLNF 

       190        200        210        220        230        240 
NSTAYLTSTF QYLELIDVIS GLVKATVFGF IISIISCYSG YYSGKGAKGV GRATTSAVVN 

       250 
SSILILISNY LITELLFKV 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017197 Genomic DNA. Translation: AAU03528.1.
RefSeqYP_067010.1. NC_006142.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING257363.RT0041.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU03528; AAU03528; RT0041.
GeneID2959349.
KEGGrty:RT0041.
PATRIC17909232. VBIRicTyp34752_0038.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0767.
HOGENOMHOG000255132.
KOK02066.
OMAIFAGKIG.
OrthoDBEOG6RJV8Q.
ProtClustDBCLSK870740.

Enzyme and pathway databases

BioCycRTYP257363:GJEQ-43-MONOMER.

Family and domain databases

InterProIPR003453. Permease.
[Graphical view]
PfamPF02405. Permease. 1 hit.
[Graphical view]
TIGRFAMsTIGR00056. TIGR00056. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY041_RICTY
AccessionPrimary (citable) accession number: Q68XW4
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: October 11, 2004
Last modified: February 19, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names