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Q68XQ6

- RECF_RICTY

UniProt

Q68XQ6 - RECF_RICTY

Protein

DNA replication and repair protein RecF

Gene

recF

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (11 Oct 2004)
      Previous versions | rss
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    Functioni

    The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi33 – 408ATPUniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-HAMAP
    2. single-stranded DNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. DNA repair Source: UniProtKB-HAMAP
    2. DNA replication Source: UniProtKB-HAMAP
    3. SOS response Source: UniProtKB-HAMAP

    Keywords - Biological processi

    DNA damage, DNA repair, DNA replication, SOS response

    Keywords - Ligandi

    ATP-binding, DNA-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciRTYP257363:GJEQ-108-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA replication and repair protein RecFUniRule annotation
    Gene namesi
    Name:recFUniRule annotation
    Ordered Locus Names:RT0100
    OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
    Taxonomic identifieri257363 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
    ProteomesiUP000000604: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 360360DNA replication and repair protein RecFPRO_0000236139Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi257363.RT0100.

    Structurei

    3D structure databases

    ProteinModelPortaliQ68XQ6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RecF family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1195.
    HOGENOMiHOG000269558.
    KOiK03629.
    OMAiYDEICAL.
    OrthoDBiEOG6HTP3X.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    HAMAPiMF_00365. RecF.
    InterProiIPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view]
    PfamiPF02463. SMC_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    TIGRFAMsiTIGR00611. recf. 1 hit.
    PROSITEiPS00617. RECF_1. 1 hit.
    PS00618. RECF_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q68XQ6-1 [UniParc]FASTAAdd to Basket

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    MKNIFLHSLN LENYRNFKNL ELKIDNIPII LTGENGSGKT NILEAISLFY    50
    PGRGLRSSKL TDICKTSEDY CRVKALLQSK LGIADFSTHI KRNSNRRITE 100
    YNASKIANNE LSKFTSMVWL TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH 150
    AELLNKYEYY MHERNKILAE DIRDNNWLKI IEENMANISN IIANNRLKTI 200
    RFMQQAIDEI ENEFPKADLS IDGIIEQKIL NVEEDIVSFI ITELYQTRSK 250
    DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEMNST 300
    IKLTKITPIL LLDEIFVHLD DKRRQYLMDF FTALNIQLWV TATNLDGIEN 350
    FANKAQLIKL 360
    Length:360
    Mass (Da):41,725
    Last modified:October 11, 2004 - v1
    Checksum:i6D8BA92151E64935
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017197 Genomic DNA. Translation: AAU03586.1.
    RefSeqiYP_067068.1. NC_006142.1.

    Genome annotation databases

    EnsemblBacteriaiAAU03586; AAU03586; RT0100.
    GeneIDi2958524.
    KEGGirty:RT0100.
    PATRICi17909372. VBIRicTyp34752_0107.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017197 Genomic DNA. Translation: AAU03586.1 .
    RefSeqi YP_067068.1. NC_006142.1.

    3D structure databases

    ProteinModelPortali Q68XQ6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 257363.RT0100.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAU03586 ; AAU03586 ; RT0100 .
    GeneIDi 2958524.
    KEGGi rty:RT0100.
    PATRICi 17909372. VBIRicTyp34752_0107.

    Phylogenomic databases

    eggNOGi COG1195.
    HOGENOMi HOG000269558.
    KOi K03629.
    OMAi YDEICAL.
    OrthoDBi EOG6HTP3X.

    Enzyme and pathway databases

    BioCyci RTYP257363:GJEQ-108-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    HAMAPi MF_00365. RecF.
    InterProi IPR001238. DNA-binding_RecF.
    IPR018078. DNA-binding_RecF_CS.
    IPR027417. P-loop_NTPase.
    IPR003395. RecF/RecN/SMC_N.
    [Graphical view ]
    Pfami PF02463. SMC_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    TIGRFAMsi TIGR00611. recf. 1 hit.
    PROSITEi PS00617. RECF_1. 1 hit.
    PS00618. RECF_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-144 / Wilmington.

    Entry informationi

    Entry nameiRECF_RICTY
    AccessioniPrimary (citable) accession number: Q68XQ6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 16, 2006
    Last sequence update: October 11, 2004
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia typhi
      Rickettsia typhi (strain Wilmington): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3