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Q68XQ6 (RECF_RICTY) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DNA replication and repair protein RecF
Gene names
Name:recF
Ordered Locus Names:RT0100
OrganismRickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]
Taxonomic identifier257363 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length360 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity. HAMAP-Rule MF_00365

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00365.

Sequence similarities

Belongs to the RecF family.

Ontologies

Keywords
   Biological processDNA damage
DNA repair
DNA replication
SOS response
   Cellular componentCytoplasm
   LigandATP-binding
DNA-binding
Nucleotide-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: UniProtKB-HAMAP

DNA replication

Inferred from electronic annotation. Source: UniProtKB-HAMAP

SOS response

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

single-stranded DNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 360360DNA replication and repair protein RecF HAMAP-Rule MF_00365
PRO_0000236139

Regions

Nucleotide binding33 – 408ATP Potential

Sequences

Sequence LengthMass (Da)Tools
Q68XQ6 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 6D8BA92151E64935

FASTA36041,725
        10         20         30         40         50         60 
MKNIFLHSLN LENYRNFKNL ELKIDNIPII LTGENGSGKT NILEAISLFY PGRGLRSSKL 

        70         80         90        100        110        120 
TDICKTSEDY CRVKALLQSK LGIADFSTHI KRNSNRRITE YNASKIANNE LSKFTSMVWL 

       130        140        150        160        170        180 
TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH AELLNKYEYY MHERNKILAE DIRDNNWLKI 

       190        200        210        220        230        240 
IEENMANISN IIANNRLKTI RFMQQAIDEI ENEFPKADLS IDGIIEQKIL NVEEDIVSFI 

       250        260        270        280        290        300 
ITELYQTRSK DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEMNST 

       310        320        330        340        350        360 
IKLTKITPIL LLDEIFVHLD DKRRQYLMDF FTALNIQLWV TATNLDGIEN FANKAQLIKL 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017197 Genomic DNA. Translation: AAU03586.1.
RefSeqYP_067068.1. NC_006142.1.

3D structure databases

ProteinModelPortalQ68XQ6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING257363.RT0100.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU03586; AAU03586; RT0100.
GeneID2958524.
KEGGrty:RT0100.
PATRIC17909372. VBIRicTyp34752_0107.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1195.
HOGENOMHOG000269558.
KOK03629.
OMALDDIMSH.
OrthoDBEOG6HTP3X.
ProtClustDBPRK00064.

Enzyme and pathway databases

BioCycRTYP257363:GJEQ-108-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 2 hits.
HAMAPMF_00365. RecF.
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00611. recf. 1 hit.
PROSITEPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRECF_RICTY
AccessionPrimary (citable) accession number: Q68XQ6
Entry history
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: October 11, 2004
Last modified: April 16, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names