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Reviewed, UniProtKB/Swiss-Prot Q68XQ6 (RECF_RICTY)

Last modified December 15, 2009. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    DNA replication and repair protein recF
Gene names
Name: recF
Ordered Locus Names: RT0100
OrganismRickettsia typhi [Complete proteome] [HAMAP]
Taxonomic identifier785 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length360 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the recF family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 360360DNA replication and repair protein recF HAMAP MF_00365
PRO_0000236139

Regions

Nucleotide binding33 – 408ATP Potential

Sequences

Sequence LengthMass (Da)Tools
Q68XQ6-1 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 6D8BA92151E64935

FASTA36041,725
        10         20         30         40         50         60 
MKNIFLHSLN LENYRNFKNL ELKIDNIPII LTGENGSGKT NILEAISLFY PGRGLRSSKL 

        70         80         90        100        110        120 
TDICKTSEDY CRVKALLQSK LGIADFSTHI KRNSNRRITE YNASKIANNE LSKFTSMVWL 

       130        140        150        160        170        180 
TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH AELLNKYEYY MHERNKILAE DIRDNNWLKI 

       190        200        210        220        230        240 
IEENMANISN IIANNRLKTI RFMQQAIDEI ENEFPKADLS IDGIIEQKIL NVEEDIVSFI 

       250        260        270        280        290        300 
ITELYQTRSK DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEMNST 

       310        320        330        340        350        360 
IKLTKITPIL LLDEIFVHLD DKRRQYLMDF FTALNIQLWV TATNLDGIEN FANKAQLIKL 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed: 15317790] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

AE017197 Genomic DNA. Translation: AAU03586.1.
RefSeqYP_067068.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID2958524.
GenomeReviewsGene locus RT0100 in contig AE017197_GR.
KEGGrty:RT0100.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG645124.
OMADDIMSHL.

Enzyme and pathway databases

BioCycRTYP257363:RT0100-MON.

Family and domain databases

HAMAPMF_00365.
[Tree]
InterProIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamPF02463. SMC_N. 1 hit.
[Graphical view]
PROSITEPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRECF_RICTY
AccessionPrimary (citable) accession number: Q68XQ6
Entry history
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: October 11, 2004
Last modified: December 15, 2009
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents