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Q68XQ6

- RECF_RICTY

UniProt

Q68XQ6 - RECF_RICTY

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Protein
DNA replication and repair protein RecF
Gene
recF, RT0100
Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP By similarity.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi33 – 408ATP Reviewed prediction

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. single-stranded DNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. DNA repair Source: UniProtKB-HAMAP
  2. DNA replication Source: UniProtKB-HAMAP
  3. SOS response Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair, DNA replication, SOS response

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-108-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA replication and repair protein RecF
Gene namesi
Name:recF
Ordered Locus Names:RT0100
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 360360DNA replication and repair protein RecFUniRule annotation
PRO_0000236139Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257363.RT0100.

Structurei

3D structure databases

ProteinModelPortaliQ68XQ6.

Family & Domainsi

Sequence similaritiesi

Belongs to the RecF family.

Phylogenomic databases

eggNOGiCOG1195.
HOGENOMiHOG000269558.
KOiK03629.
OMAiYDEICAL.
OrthoDBiEOG6HTP3X.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
HAMAPiMF_00365. RecF.
InterProiIPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view]
PfamiPF02463. SMC_N. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00611. recf. 1 hit.
PROSITEiPS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q68XQ6-1 [UniParc]FASTAAdd to Basket

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MKNIFLHSLN LENYRNFKNL ELKIDNIPII LTGENGSGKT NILEAISLFY    50
PGRGLRSSKL TDICKTSEDY CRVKALLQSK LGIADFSTHI KRNSNRRITE 100
YNASKIANNE LSKFTSMVWL TPQMEGIFTS SSTDRRKFLD RIVYNFDTKH 150
AELLNKYEYY MHERNKILAE DIRDNNWLKI IEENMANISN IIANNRLKTI 200
RFMQQAIDEI ENEFPKADLS IDGIIEQKIL NVEEDIVSFI ITELYQTRSK 250
DKLLGRTSFG IHKSDFLVKH QKKNILAKFC STGEQKAILI AIILAEMNST 300
IKLTKITPIL LLDEIFVHLD DKRRQYLMDF FTALNIQLWV TATNLDGIEN 350
FANKAQLIKL 360
Length:360
Mass (Da):41,725
Last modified:October 11, 2004 - v1
Checksum:i6D8BA92151E64935
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017197 Genomic DNA. Translation: AAU03586.1.
RefSeqiYP_067068.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU03586; AAU03586; RT0100.
GeneIDi2958524.
KEGGirty:RT0100.
PATRICi17909372. VBIRicTyp34752_0107.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017197 Genomic DNA. Translation: AAU03586.1 .
RefSeqi YP_067068.1. NC_006142.1.

3D structure databases

ProteinModelPortali Q68XQ6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257363.RT0100.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAU03586 ; AAU03586 ; RT0100 .
GeneIDi 2958524.
KEGGi rty:RT0100.
PATRICi 17909372. VBIRicTyp34752_0107.

Phylogenomic databases

eggNOGi COG1195.
HOGENOMi HOG000269558.
KOi K03629.
OMAi YDEICAL.
OrthoDBi EOG6HTP3X.

Enzyme and pathway databases

BioCyci RTYP257363:GJEQ-108-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
HAMAPi MF_00365. RecF.
InterProi IPR001238. DNA-binding_RecF.
IPR018078. DNA-binding_RecF_CS.
IPR027417. P-loop_NTPase.
IPR003395. RecF/RecN/SMC_N.
[Graphical view ]
Pfami PF02463. SMC_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00611. recf. 1 hit.
PROSITEi PS00617. RECF_1. 1 hit.
PS00618. RECF_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiRECF_RICTY
AccessioniPrimary (citable) accession number: Q68XQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: October 11, 2004
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi