Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q68XD5

- RL13_RICTY

UniProt

Q68XD5 - RL13_RICTY

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

50S ribosomal protein L13

Gene

rplM

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-237-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:RT0225
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 15515550S ribosomal protein L13PRO_0000272383Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi257363.RT0225.

Structurei

3D structure databases

ProteinModelPortaliQ68XD5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0102.
HOGENOMiHOG000225286.
KOiK02871.
OMAiYETNFTK.
OrthoDBiEOG628FBD.

Family and domain databases

Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13.
InterProiIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q68XD5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTYSAKPSE IEKKWWVIDA KNIVLGRLAS RVAIMLRGKH KPSFTPHLDC
60 70 80 90 100
GDNIIIINAE HIKLTGKKLN HKDGKVYYRH TGFPGGIKDT TAGKILSGKY
110 120 130 140 150
PERVIKMAVK RMITRNVLGA KQMSNLYVYA NCEHPHMAQQ PTVYDFASKN

PKNKK
Length:155
Mass (Da):17,575
Last modified:October 11, 2004 - v1
Checksum:i4BBAB13904E0104C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03707.1.
RefSeqiYP_067189.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU03707; AAU03707; RT0225.
GeneIDi2958943.
KEGGirty:RT0225.
PATRICi17909632. VBIRicTyp34752_0233.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03707.1 .
RefSeqi YP_067189.1. NC_006142.1.

3D structure databases

ProteinModelPortali Q68XD5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257363.RT0225.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAU03707 ; AAU03707 ; RT0225 .
GeneIDi 2958943.
KEGGi rty:RT0225.
PATRICi 17909632. VBIRicTyp34752_0233.

Phylogenomic databases

eggNOGi COG0102.
HOGENOMi HOG000225286.
KOi K02871.
OMAi YETNFTK.
OrthoDBi EOG628FBD.

Enzyme and pathway databases

BioCyci RTYP257363:GJEQ-237-MONOMER.

Family and domain databases

Gene3Di 3.90.1180.10. 1 hit.
HAMAPi MF_01366. Ribosomal_L13.
InterProi IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view ]
PANTHERi PTHR11545. PTHR11545. 1 hit.
Pfami PF00572. Ribosomal_L13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMi SSF52161. SSF52161. 1 hit.
TIGRFAMsi TIGR01066. rplM_bact. 1 hit.
PROSITEi PS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiRL13_RICTY
AccessioniPrimary (citable) accession number: Q68XD5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: October 11, 2004
Last modified: October 1, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3