Q68XD5 (RL13_RICTY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L13

Gene names

Name:	rplM
Ordered Locus Names:	RT0225

Organism

Rickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]

Taxonomic identifier

257363 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › typhus group › Rickettsia typhi

Protein attributes

Sequence length	155 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP-Rule MF_01366
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L13P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 155	155	50S ribosomal protein L13 HAMAP-Rule MF_01366		PRO_0000272383

Sequences

	Sequence		Length	Mass (Da)
	Q68XD5 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: 4BBAB13904E0104C	FASTA	155	17,575
	10 20 30 40 50 60 MKTYSAKPSE IEKKWWVIDA KNIVLGRLAS RVAIMLRGKH KPSFTPHLDC GDNIIIINAE 70 80 90 100 110 120 HIKLTGKKLN HKDGKVYYRH TGFPGGIKDT TAGKILSGKY PERVIKMAVK RMITRNVLGA 130 140 150 KQMSNLYVYA NCEHPHMAQQ PTVYDFASKN PKNKK

References

[1]

"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae." McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. , Hong C., Yu X.-J., Walker D.H., Weinstock G.M. J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE017197 Genomic DNA. Translation: AAU03707.1.
RefSeq	YP_067189.1. NC_006142.1.
3D structure databases
HSSP	HSSP built from PDB template 1J3A based on UniProtKB O59300.
ProteinModelPortal	Q68XD5.
ModBase	Search...
Protein-protein interaction databases
STRING	257363.RT0225.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAU03707; AAU03707; RT0225.
GeneID	2958943.
KEGG	rty:RT0225.
PATRIC	17909632. VBIRicTyp34752_0233.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0102.
HOGENOM	HOG000225286.
KO	K02871.
OMA	YTPHMDC.
ProtClustDB	PRK09216.
Enzyme and pathway databases
BioCyc	RTYP257363:GJEQ-237-MONOMER.
Family and domain databases
Gene3D	3.90.1180.10. 1 hit.
HAMAP	MF_01366_B. Ribosomal_L13_B.
InterPro	IPR005822. Ribosomal_L13. IPR005823. Ribosomal_L13_bac-type. IPR023563. Ribosomal_L13_CS. IPR023564. Ribosomal_L13_dom. [Graphical view]
PANTHER	PTHR11545. PTHR11545. 1 hit.
Pfam	PF00572. Ribosomal_L13. 1 hit. [Graphical view]
PIRSF	PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAM	SSF52161. Ribosomal_L13. 1 hit.
TIGRFAMs	TIGR01066. rplM_bact. 1 hit.
PROSITE	PS00783. RIBOSOMAL_L13. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL13_RICTY

Accession

Primary (citable) accession number: Q68XD5

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 23, 2007
Last sequence update:	October 11, 2004
Last modified:	May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program