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Protein

Putative polysaccharide polymerase RT0347

Gene

RT0347

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-364-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative polysaccharide polymerase RT0347
Gene namesi
Ordered Locus Names:RT0347
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei23 – 4321HelicalSequence AnalysisAdd
BLAST
Transmembranei77 – 9721HelicalSequence AnalysisAdd
BLAST
Transmembranei120 – 14021HelicalSequence AnalysisAdd
BLAST
Transmembranei156 – 17823HelicalSequence AnalysisAdd
BLAST
Transmembranei201 – 22121HelicalSequence AnalysisAdd
BLAST
Transmembranei227 – 24721HelicalSequence AnalysisAdd
BLAST
Transmembranei270 – 29021HelicalSequence AnalysisAdd
BLAST
Transmembranei322 – 34221HelicalSequence AnalysisAdd
BLAST
Transmembranei353 – 37523HelicalSequence AnalysisAdd
BLAST
Transmembranei377 – 39721HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 405405Putative polysaccharide polymerase RT0347PRO_0000280993Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257363.RT0347.

Family & Domainsi

Sequence similaritiesi

Belongs to the O-antigen polymerase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG3307.
HOGENOMiHOG000010752.
OMAiVWQSSNN.
OrthoDBiEOG679TJ5.

Sequencei

Sequence statusi: Complete.

Q68X15-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQYLILSLIF LIPSLGMLTG LSIAATVLFF LLIIVITELI SFIRKQEFSK
60 70 80 90 100
KFLIKLYPRF GFDDIFCVKN RIKTELLFIA WCFISCLFTI HPINSLVTFT
110 120 130 140 150
KVFALLFLRF VNNVVTFQNI LYLKNSLILG IITAILLFFI EYSSHGFLTR
160 170 180 190 200
MFKTHFGLYM LDRGCALLSI TTWVVIIILF SNGKNINAFI LYIVVLYLLS
210 220 230 240 250
ISDSLASFVG FSIGGIIFIL ARLIKKIFFK LITISLITGS LLFPIIAKQI
260 270 280 290 300
DPHNLSEKYL ATKPSAAHRL FIWHFVANKI IIKPILGYGF ASSKYIKTSD
310 320 330 340 350
NEMIDYRGEK LHPLPLHPHN NILQITLELG ILGLALFLCL VYKYLKEIDN
360 370 380 390 400
IKISNFRAAS YSCFINYYII GMISYNIWQT WWILSGIWIL VLMKLLVKPD

IIIDN
Length:405
Mass (Da):46,583
Last modified:October 11, 2004 - v1
Checksum:iD0AF1D1AA79DE853
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03827.1.
RefSeqiWP_011190811.1. NC_006142.1.
YP_067309.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU03827; AAU03827; RT0347.
KEGGirty:RT0347.
PATRICi17909898. VBIRicTyp34752_0364.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03827.1.
RefSeqiWP_011190811.1. NC_006142.1.
YP_067309.1. NC_006142.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257363.RT0347.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAU03827; AAU03827; RT0347.
KEGGirty:RT0347.
PATRICi17909898. VBIRicTyp34752_0364.

Phylogenomic databases

eggNOGiCOG3307.
HOGENOMiHOG000010752.
OMAiVWQSSNN.
OrthoDBiEOG679TJ5.

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-364-MONOMER.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiY347_RICTY
AccessioniPrimary (citable) accession number: Q68X15
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: October 11, 2004
Last modified: May 27, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.