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Q68WU3

- RBFA_RICTY

UniProt

Q68WU3 - RBFA_RICTY

Protein

Ribosome-binding factor A

Gene

rbfA

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.UniRule annotation

    GO - Biological processi

    1. rRNA processing Source: UniProtKB-HAMAP

    Keywords - Biological processi

    rRNA processing

    Enzyme and pathway databases

    BioCyciRTYP257363:GJEQ-444-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome-binding factor AUniRule annotation
    Gene namesi
    Name:rbfAUniRule annotation
    Ordered Locus Names:RT0422
    OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
    Taxonomic identifieri257363 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
    ProteomesiUP000000604: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 127127Ribosome-binding factor APRO_0000102723Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi257363.RT0422.

    Structurei

    3D structure databases

    ProteinModelPortaliQ68WU3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RbfA family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0858.
    HOGENOMiHOG000272967.
    KOiK02834.
    OMAiTNKINMK.
    OrthoDBiEOG68Q0RP.

    Family and domain databases

    Gene3Di3.30.300.20. 1 hit.
    HAMAPiMF_00003. RbfA.
    InterProiIPR015946. KH_dom-like_a/b.
    IPR000238. Ribosome-bd_facA.
    IPR023799. Ribosome-bd_facA_dom.
    IPR020053. Ribosome-bd_factorA_CS.
    [Graphical view]
    PfamiPF02033. RBFA. 1 hit.
    [Graphical view]
    ProDomiPD007327. Rib_bd_factA. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF89919. SSF89919. 1 hit.
    TIGRFAMsiTIGR00082. rbfA. 1 hit.
    PROSITEiPS01319. RBFA. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q68WU3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKKLTKTNSH RQQKLASIIN EVLIEILKRG KMLDRRLFDC PLTITKIVVT    50
    ADLKIANCYF FPFNTKLTFN DIMDALNNSK HAIRNFITNK INMKFSPEIR 100
    FHYDYGFDNA IKIEKLLKSS SLKDKTN 127
    Length:127
    Mass (Da):14,857
    Last modified:October 11, 2004 - v1
    Checksum:iB755AD2DF984850C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017197 Genomic DNA. Translation: AAU03899.1.
    RefSeqiYP_067381.1. NC_006142.1.

    Genome annotation databases

    EnsemblBacteriaiAAU03899; AAU03899; RT0422.
    GeneIDi2958772.
    KEGGirty:RT0422.
    PATRICi17910076. VBIRicTyp34752_0450.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017197 Genomic DNA. Translation: AAU03899.1 .
    RefSeqi YP_067381.1. NC_006142.1.

    3D structure databases

    ProteinModelPortali Q68WU3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 257363.RT0422.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAU03899 ; AAU03899 ; RT0422 .
    GeneIDi 2958772.
    KEGGi rty:RT0422.
    PATRICi 17910076. VBIRicTyp34752_0450.

    Phylogenomic databases

    eggNOGi COG0858.
    HOGENOMi HOG000272967.
    KOi K02834.
    OMAi TNKINMK.
    OrthoDBi EOG68Q0RP.

    Enzyme and pathway databases

    BioCyci RTYP257363:GJEQ-444-MONOMER.

    Family and domain databases

    Gene3Di 3.30.300.20. 1 hit.
    HAMAPi MF_00003. RbfA.
    InterProi IPR015946. KH_dom-like_a/b.
    IPR000238. Ribosome-bd_facA.
    IPR023799. Ribosome-bd_facA_dom.
    IPR020053. Ribosome-bd_factorA_CS.
    [Graphical view ]
    Pfami PF02033. RBFA. 1 hit.
    [Graphical view ]
    ProDomi PD007327. Rib_bd_factA. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF89919. SSF89919. 1 hit.
    TIGRFAMsi TIGR00082. rbfA. 1 hit.
    PROSITEi PS01319. RBFA. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-144 / Wilmington.

    Entry informationi

    Entry nameiRBFA_RICTY
    AccessioniPrimary (citable) accession number: Q68WU3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 15, 2005
    Last sequence update: October 11, 2004
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia typhi
      Rickettsia typhi (strain Wilmington): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3