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Q68WU3 (RBFA_RICTY) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome-binding factor A
Gene names
Name:rbfA
Ordered Locus Names:RT0422
OrganismRickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]
Taxonomic identifier257363 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length127 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA By similarity. HAMAP-Rule MF_00003

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00003.

Sequence similarities

Belongs to the RbfA family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 127127Ribosome-binding factor A HAMAP-Rule MF_00003
PRO_0000102723

Sequences

Sequence LengthMass (Da)Tools
Q68WU3 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: B755AD2DF984850C

FASTA12714,857
        10         20         30         40         50         60 
MKKLTKTNSH RQQKLASIIN EVLIEILKRG KMLDRRLFDC PLTITKIVVT ADLKIANCYF 

        70         80         90        100        110        120 
FPFNTKLTFN DIMDALNNSK HAIRNFITNK INMKFSPEIR FHYDYGFDNA IKIEKLLKSS 


SLKDKTN 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017197 Genomic DNA. Translation: AAU03899.1.
RefSeqYP_067381.1. NC_006142.1.

3D structure databases

ProteinModelPortalQ68WU3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING257363.RT0422.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU03899; AAU03899; RT0422.
GeneID2958772.
KEGGrty:RT0422.
PATRIC17910076. VBIRicTyp34752_0450.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0858.
HOGENOMHOG000272967.
KOK02834.
OMATNKINMK.
OrthoDBEOG68Q0RP.
ProtClustDBPRK00521.

Enzyme and pathway databases

BioCycRTYP257363:GJEQ-444-MONOMER.

Family and domain databases

Gene3D3.30.300.20. 1 hit.
HAMAPMF_00003. RbfA.
InterProIPR015946. KH_dom-like_a/b.
IPR000238. Ribosome-bd_facA.
IPR023799. Ribosome-bd_facA_dom.
IPR020053. Ribosome-bd_factorA_CS.
[Graphical view]
PfamPF02033. RBFA. 1 hit.
[Graphical view]
ProDomPD007327. Rib_bd_factA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF89919. SSF89919. 1 hit.
TIGRFAMsTIGR00082. rbfA. 1 hit.
PROSITEPS01319. RBFA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRBFA_RICTY
AccessionPrimary (citable) accession number: Q68WU3
Entry history
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: October 11, 2004
Last modified: February 19, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names