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Q68WL4 (RS1_RICTY) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S1
Gene names
Name:rpsA
Ordered Locus Names:RT0508
OrganismRickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]
Taxonomic identifier257363 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length568 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence By similarity.

Sequence similarities

Belongs to the ribosomal protein S1P family.

Contains 6 S1 motif domains.

Ontologies

Keywords
   DomainRepeat
   LigandRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 56856830S ribosomal protein S1
PRO_0000286648

Regions

Domain39 – 10062S1 motif 1
Domain118 – 18467S1 motif 2
Domain205 – 27369S1 motif 3
Domain290 – 36071S1 motif 4
Domain377 – 44771S1 motif 5
Domain464 – 53370S1 motif 6

Sequences

Sequence LengthMass (Da)Tools
Q68WL4 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: FE0C7BF001DEB7E2

FASTA56863,875
        10         20         30         40         50         60 
MSIKLKQRFV PQLAAINYQF EEDFSKMLKT VDTSHIKEKT VVKGQVIEIK NDMIIVDVGL 

        70         80         90        100        110        120 
KNEGRIPKSE FLSLPEVGDV VEVFIEKIEG RNGRTILSRE KAVKEELWGQ LEIMCSKGEF 

       130        140        150        160        170        180 
VDGTIFGRVK GGFTVDLSGV VAFLPGSQVD VRPIKDPTSI MNIKQPFKIL SMDKKLGNIV 

       190        200        210        220        230        240 
VSRRVILEES RSEARDEMLS KIKEGMILEG VVKNITDYGA FIDLGSVDGL LHLTDISWGR 

       250        260        270        280        290        300 
VNHPSEVLEF NQKVKVMVIK FDEKTKRISL GIKQLDSNPW DAIKEEFPVG KKMTGKVTNF 

       310        320        330        340        350        360 
ADYGVFLELK DGLEGLVHSS EISWLKSNQN PRKMLTIGQE VEFIVLEVDT EKHRVSLSIK 

       370        380        390        400        410        420 
QCQENPLIKF AENNPIGTII KAPIRNITDF GIFVVLGNNM DGMIHEGDIS WEDNGTDLLK 

       430        440        450        460        470        480 
SYKKGDEIEC KVLAINFEKE QVSLGIKQLS PNPYQKISDE YKKGTIVKAV VTEIKDDGLV 

       490        500        510        520        530        540 
VLLNNKVTGF IKRVELSDEK DEQKPEMFQV DEEIDAKVVS IEKSTGRVLL SVKAHKIAER 

       550        560 
QKTLKEYGSS DNTTNMGDIL ANVLEEKK 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017197 Genomic DNA. Translation: AAU03978.1.
RefSeqYP_067460.1. NC_006142.1.

3D structure databases

ProteinModelPortalQ68WL4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING257363.RT0508.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU03978; AAU03978; RT0508.
GeneID2959075.
KEGGrty:RT0508.
PATRIC17910256. VBIRicTyp34752_0534.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0539.
HOGENOMHOG000044052.
KOK02945.
OMANINSDER.
OrthoDBEOG6WT8CC.

Enzyme and pathway databases

BioCycRTYP257363:GJEQ-533-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 6 hits.
InterProIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR000110. Ribosomal_S1.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamPF00575. S1. 6 hits.
[Graphical view]
PIRSFPIRSF002111. RpsA. 1 hit.
PRINTSPR00681. RIBOSOMALS1.
SMARTSM00316. S1. 6 hits.
[Graphical view]
SUPFAMSSF50249. SSF50249. 6 hits.
TIGRFAMsTIGR00717. rpsA. 1 hit.
PROSITEPS50126. S1. 6 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS1_RICTY
AccessionPrimary (citable) accession number: Q68WL4
Entry history
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: October 11, 2004
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names

Ribosomal proteins

Ribosomal proteins families and list of entries