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Q68WL4

- RS1_RICTY

UniProt

Q68WL4 - RS1_RICTY

Protein

30S ribosomal protein S1

Gene

rpsA

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (11 Oct 2004)
      Previous versions | rss
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    Functioni

    Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence By similarity.By similarity

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciRTYP257363:GJEQ-533-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S1
    Gene namesi
    Name:rpsA
    Ordered Locus Names:RT0508
    OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
    Taxonomic identifieri257363 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
    ProteomesiUP000000604: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 56856830S ribosomal protein S1PRO_0000286648Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi257363.RT0508.

    Structurei

    3D structure databases

    ProteinModelPortaliQ68WL4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini39 – 10062S1 motif 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini118 – 18467S1 motif 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini205 – 27369S1 motif 3PROSITE-ProRule annotationAdd
    BLAST
    Domaini290 – 36071S1 motif 4PROSITE-ProRule annotationAdd
    BLAST
    Domaini377 – 44771S1 motif 5PROSITE-ProRule annotationAdd
    BLAST
    Domaini464 – 53370S1 motif 6PROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S1P family.Curated
    Contains 6 S1 motif domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG0539.
    HOGENOMiHOG000044052.
    KOiK02945.
    OMAiNINSDER.
    OrthoDBiEOG6WT8CC.

    Family and domain databases

    Gene3Di2.40.50.140. 6 hits.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR000110. Ribosomal_S1.
    IPR022967. RNA-binding_domain_S1.
    [Graphical view]
    PfamiPF00575. S1. 6 hits.
    [Graphical view]
    PIRSFiPIRSF002111. RpsA. 1 hit.
    PRINTSiPR00681. RIBOSOMALS1.
    SMARTiSM00316. S1. 6 hits.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 6 hits.
    TIGRFAMsiTIGR00717. rpsA. 1 hit.
    PROSITEiPS50126. S1. 6 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q68WL4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSIKLKQRFV PQLAAINYQF EEDFSKMLKT VDTSHIKEKT VVKGQVIEIK    50
    NDMIIVDVGL KNEGRIPKSE FLSLPEVGDV VEVFIEKIEG RNGRTILSRE 100
    KAVKEELWGQ LEIMCSKGEF VDGTIFGRVK GGFTVDLSGV VAFLPGSQVD 150
    VRPIKDPTSI MNIKQPFKIL SMDKKLGNIV VSRRVILEES RSEARDEMLS 200
    KIKEGMILEG VVKNITDYGA FIDLGSVDGL LHLTDISWGR VNHPSEVLEF 250
    NQKVKVMVIK FDEKTKRISL GIKQLDSNPW DAIKEEFPVG KKMTGKVTNF 300
    ADYGVFLELK DGLEGLVHSS EISWLKSNQN PRKMLTIGQE VEFIVLEVDT 350
    EKHRVSLSIK QCQENPLIKF AENNPIGTII KAPIRNITDF GIFVVLGNNM 400
    DGMIHEGDIS WEDNGTDLLK SYKKGDEIEC KVLAINFEKE QVSLGIKQLS 450
    PNPYQKISDE YKKGTIVKAV VTEIKDDGLV VLLNNKVTGF IKRVELSDEK 500
    DEQKPEMFQV DEEIDAKVVS IEKSTGRVLL SVKAHKIAER QKTLKEYGSS 550
    DNTTNMGDIL ANVLEEKK 568
    Length:568
    Mass (Da):63,875
    Last modified:October 11, 2004 - v1
    Checksum:iFE0C7BF001DEB7E2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017197 Genomic DNA. Translation: AAU03978.1.
    RefSeqiYP_067460.1. NC_006142.1.

    Genome annotation databases

    EnsemblBacteriaiAAU03978; AAU03978; RT0508.
    GeneIDi2959075.
    KEGGirty:RT0508.
    PATRICi17910256. VBIRicTyp34752_0534.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017197 Genomic DNA. Translation: AAU03978.1 .
    RefSeqi YP_067460.1. NC_006142.1.

    3D structure databases

    ProteinModelPortali Q68WL4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 257363.RT0508.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAU03978 ; AAU03978 ; RT0508 .
    GeneIDi 2959075.
    KEGGi rty:RT0508.
    PATRICi 17910256. VBIRicTyp34752_0534.

    Phylogenomic databases

    eggNOGi COG0539.
    HOGENOMi HOG000044052.
    KOi K02945.
    OMAi NINSDER.
    OrthoDBi EOG6WT8CC.

    Enzyme and pathway databases

    BioCyci RTYP257363:GJEQ-533-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 6 hits.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR000110. Ribosomal_S1.
    IPR022967. RNA-binding_domain_S1.
    [Graphical view ]
    Pfami PF00575. S1. 6 hits.
    [Graphical view ]
    PIRSFi PIRSF002111. RpsA. 1 hit.
    PRINTSi PR00681. RIBOSOMALS1.
    SMARTi SM00316. S1. 6 hits.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 6 hits.
    TIGRFAMsi TIGR00717. rpsA. 1 hit.
    PROSITEi PS50126. S1. 6 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-144 / Wilmington.

    Entry informationi

    Entry nameiRS1_RICTY
    AccessioniPrimary (citable) accession number: Q68WL4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 15, 2007
    Last sequence update: October 11, 2004
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia typhi
      Rickettsia typhi (strain Wilmington): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3