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Q68WL4

- RS1_RICTY

UniProt

Q68WL4 - RS1_RICTY

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Protein

30S ribosomal protein S1

Gene

rpsA

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity).By similarity

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-533-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S1
Gene namesi
Name:rpsA
Ordered Locus Names:RT0508
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 56856830S ribosomal protein S1PRO_0000286648Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257363.RT0508.

Structurei

3D structure databases

ProteinModelPortaliQ68WL4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 10062S1 motif 1PROSITE-ProRule annotationAdd
BLAST
Domaini118 – 18467S1 motif 2PROSITE-ProRule annotationAdd
BLAST
Domaini205 – 27369S1 motif 3PROSITE-ProRule annotationAdd
BLAST
Domaini290 – 36071S1 motif 4PROSITE-ProRule annotationAdd
BLAST
Domaini377 – 44771S1 motif 5PROSITE-ProRule annotationAdd
BLAST
Domaini464 – 53370S1 motif 6PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S1P family.Curated
Contains 6 S1 motif domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG0539.
HOGENOMiHOG000044052.
KOiK02945.
OMAiNINSDER.
OrthoDBiEOG6WT8CC.

Family and domain databases

Gene3Di2.40.50.140. 6 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR000110. Ribosomal_S1.
IPR022967. S1_dom.
[Graphical view]
PfamiPF00575. S1. 6 hits.
[Graphical view]
PIRSFiPIRSF002111. RpsA. 1 hit.
PRINTSiPR00681. RIBOSOMALS1.
SMARTiSM00316. S1. 6 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 6 hits.
TIGRFAMsiTIGR00717. rpsA. 1 hit.
PROSITEiPS50126. S1. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q68WL4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSIKLKQRFV PQLAAINYQF EEDFSKMLKT VDTSHIKEKT VVKGQVIEIK
60 70 80 90 100
NDMIIVDVGL KNEGRIPKSE FLSLPEVGDV VEVFIEKIEG RNGRTILSRE
110 120 130 140 150
KAVKEELWGQ LEIMCSKGEF VDGTIFGRVK GGFTVDLSGV VAFLPGSQVD
160 170 180 190 200
VRPIKDPTSI MNIKQPFKIL SMDKKLGNIV VSRRVILEES RSEARDEMLS
210 220 230 240 250
KIKEGMILEG VVKNITDYGA FIDLGSVDGL LHLTDISWGR VNHPSEVLEF
260 270 280 290 300
NQKVKVMVIK FDEKTKRISL GIKQLDSNPW DAIKEEFPVG KKMTGKVTNF
310 320 330 340 350
ADYGVFLELK DGLEGLVHSS EISWLKSNQN PRKMLTIGQE VEFIVLEVDT
360 370 380 390 400
EKHRVSLSIK QCQENPLIKF AENNPIGTII KAPIRNITDF GIFVVLGNNM
410 420 430 440 450
DGMIHEGDIS WEDNGTDLLK SYKKGDEIEC KVLAINFEKE QVSLGIKQLS
460 470 480 490 500
PNPYQKISDE YKKGTIVKAV VTEIKDDGLV VLLNNKVTGF IKRVELSDEK
510 520 530 540 550
DEQKPEMFQV DEEIDAKVVS IEKSTGRVLL SVKAHKIAER QKTLKEYGSS
560
DNTTNMGDIL ANVLEEKK
Length:568
Mass (Da):63,875
Last modified:October 11, 2004 - v1
Checksum:iFE0C7BF001DEB7E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03978.1.
RefSeqiYP_067460.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU03978; AAU03978; RT0508.
GeneIDi2959075.
KEGGirty:RT0508.
PATRICi17910256. VBIRicTyp34752_0534.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU03978.1 .
RefSeqi YP_067460.1. NC_006142.1.

3D structure databases

ProteinModelPortali Q68WL4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257363.RT0508.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAU03978 ; AAU03978 ; RT0508 .
GeneIDi 2959075.
KEGGi rty:RT0508.
PATRICi 17910256. VBIRicTyp34752_0534.

Phylogenomic databases

eggNOGi COG0539.
HOGENOMi HOG000044052.
KOi K02945.
OMAi NINSDER.
OrthoDBi EOG6WT8CC.

Enzyme and pathway databases

BioCyci RTYP257363:GJEQ-533-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 6 hits.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR000110. Ribosomal_S1.
IPR022967. S1_dom.
[Graphical view ]
Pfami PF00575. S1. 6 hits.
[Graphical view ]
PIRSFi PIRSF002111. RpsA. 1 hit.
PRINTSi PR00681. RIBOSOMALS1.
SMARTi SM00316. S1. 6 hits.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 6 hits.
TIGRFAMsi TIGR00717. rpsA. 1 hit.
PROSITEi PS50126. S1. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiRS1_RICTY
AccessioniPrimary (citable) accession number: Q68WL4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: October 11, 2004
Last modified: October 29, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3