Q68WL4 (RS1_RICTY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S1

Gene names

Name:	rpsA
Ordered Locus Names:	RT0508

Organism

Rickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]

Taxonomic identifier

257363 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › typhus group › Rickettsia typhi

Protein attributes

Sequence length	568 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence By similarity.
Sequence similarities	Belongs to the ribosomal protein S1P family. Contains 6 S1 motif domains.

Ontologies

Keywords
Domain	Repeat
Ligand	RNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 568	568	30S ribosomal protein S1		PRO_0000286648
Regions
	Domain	39 – 100	62	S1 motif 1
	Domain	118 – 184	67	S1 motif 2
	Domain	205 – 273	69	S1 motif 3
	Domain	290 – 360	71	S1 motif 4
	Domain	377 – 447	71	S1 motif 5
	Domain	464 – 533	70	S1 motif 6

Sequences

	Sequence		Length	Mass (Da)
	Q68WL4 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: FE0C7BF001DEB7E2	FASTA	568	63,875
	10 20 30 40 50 60 MSIKLKQRFV PQLAAINYQF EEDFSKMLKT VDTSHIKEKT VVKGQVIEIK NDMIIVDVGL 70 80 90 100 110 120 KNEGRIPKSE FLSLPEVGDV VEVFIEKIEG RNGRTILSRE KAVKEELWGQ LEIMCSKGEF 130 140 150 160 170 180 VDGTIFGRVK GGFTVDLSGV VAFLPGSQVD VRPIKDPTSI MNIKQPFKIL SMDKKLGNIV 190 200 210 220 230 240 VSRRVILEES RSEARDEMLS KIKEGMILEG VVKNITDYGA FIDLGSVDGL LHLTDISWGR 250 260 270 280 290 300 VNHPSEVLEF NQKVKVMVIK FDEKTKRISL GIKQLDSNPW DAIKEEFPVG KKMTGKVTNF 310 320 330 340 350 360 ADYGVFLELK DGLEGLVHSS EISWLKSNQN PRKMLTIGQE VEFIVLEVDT EKHRVSLSIK 370 380 390 400 410 420 QCQENPLIKF AENNPIGTII KAPIRNITDF GIFVVLGNNM DGMIHEGDIS WEDNGTDLLK 430 440 450 460 470 480 SYKKGDEIEC KVLAINFEKE QVSLGIKQLS PNPYQKISDE YKKGTIVKAV VTEIKDDGLV 490 500 510 520 530 540 VLLNNKVTGF IKRVELSDEK DEQKPEMFQV DEEIDAKVVS IEKSTGRVLL SVKAHKIAER 550 560 QKTLKEYGSS DNTTNMGDIL ANVLEEKK

References

[1]

"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae." McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. , Hong C., Yu X.-J., Walker D.H., Weinstock G.M. J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE017197 Genomic DNA. Translation: AAU03978.1.
RefSeq	YP_067460.1. NC_006142.1.
3D structure databases
HSSP	HSSP built from PDB template 1SRO based on UniProtKB P05055.
ProteinModelPortal	Q68WL4.
ModBase	Search...
Protein-protein interaction databases
STRING	257363.RT0508.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAU03978; AAU03978; RT0508.
GeneID	2959075.
KEGG	rty:RT0508.
PATRIC	17910256. VBIRicTyp34752_0534.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0539.
HOGENOM	HOG000044052.
KO	K02945.
OMA	QLGQDPW.
ProtClustDB	PRK06299.
Enzyme and pathway databases
BioCyc	RTYP257363:GJEQ-533-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 6 hits.
InterPro	IPR012340. NA-bd_OB-fold. IPR003029. Rbsml_prot_S1_RNA-bd_dom. IPR000110. Ribosomal_S1. IPR022967. RNA-binding_domain_S1. [Graphical view]
Pfam	PF00575. S1. 6 hits. [Graphical view]
PIRSF	PIRSF002111. RpsA. 1 hit.
PRINTS	PR00681. RIBOSOMALS1.
SMART	SM00316. S1. 6 hits. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 6 hits.
TIGRFAMs	TIGR00717. rpsA. 1 hit.
PROSITE	PS50126. S1. 6 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS1_RICTY

Accession

Primary (citable) accession number: Q68WL4

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 15, 2007
Last sequence update:	October 11, 2004
Last modified:	May 1, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program