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Q68WL4

- RS1_RICTY

UniProt

Q68WL4 - RS1_RICTY

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Protein
30S ribosomal protein S1
Gene
rpsA, RT0508
Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence By similarity.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-533-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S1
Gene namesi
Name:rpsA
Ordered Locus Names:RT0508
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 56856830S ribosomal protein S1
PRO_0000286648Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257363.RT0508.

Structurei

3D structure databases

ProteinModelPortaliQ68WL4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 10062S1 motif 1
Add
BLAST
Domaini118 – 18467S1 motif 2
Add
BLAST
Domaini205 – 27369S1 motif 3
Add
BLAST
Domaini290 – 36071S1 motif 4
Add
BLAST
Domaini377 – 44771S1 motif 5
Add
BLAST
Domaini464 – 53370S1 motif 6
Add
BLAST

Sequence similaritiesi

Contains 6 S1 motif domains.

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG0539.
HOGENOMiHOG000044052.
KOiK02945.
OMAiNINSDER.
OrthoDBiEOG6WT8CC.

Family and domain databases

Gene3Di2.40.50.140. 6 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR000110. Ribosomal_S1.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamiPF00575. S1. 6 hits.
[Graphical view]
PIRSFiPIRSF002111. RpsA. 1 hit.
PRINTSiPR00681. RIBOSOMALS1.
SMARTiSM00316. S1. 6 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 6 hits.
TIGRFAMsiTIGR00717. rpsA. 1 hit.
PROSITEiPS50126. S1. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q68WL4-1 [UniParc]FASTAAdd to Basket

« Hide

MSIKLKQRFV PQLAAINYQF EEDFSKMLKT VDTSHIKEKT VVKGQVIEIK    50
NDMIIVDVGL KNEGRIPKSE FLSLPEVGDV VEVFIEKIEG RNGRTILSRE 100
KAVKEELWGQ LEIMCSKGEF VDGTIFGRVK GGFTVDLSGV VAFLPGSQVD 150
VRPIKDPTSI MNIKQPFKIL SMDKKLGNIV VSRRVILEES RSEARDEMLS 200
KIKEGMILEG VVKNITDYGA FIDLGSVDGL LHLTDISWGR VNHPSEVLEF 250
NQKVKVMVIK FDEKTKRISL GIKQLDSNPW DAIKEEFPVG KKMTGKVTNF 300
ADYGVFLELK DGLEGLVHSS EISWLKSNQN PRKMLTIGQE VEFIVLEVDT 350
EKHRVSLSIK QCQENPLIKF AENNPIGTII KAPIRNITDF GIFVVLGNNM 400
DGMIHEGDIS WEDNGTDLLK SYKKGDEIEC KVLAINFEKE QVSLGIKQLS 450
PNPYQKISDE YKKGTIVKAV VTEIKDDGLV VLLNNKVTGF IKRVELSDEK 500
DEQKPEMFQV DEEIDAKVVS IEKSTGRVLL SVKAHKIAER QKTLKEYGSS 550
DNTTNMGDIL ANVLEEKK 568
Length:568
Mass (Da):63,875
Last modified:October 11, 2004 - v1
Checksum:iFE0C7BF001DEB7E2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017197 Genomic DNA. Translation: AAU03978.1.
RefSeqiYP_067460.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU03978; AAU03978; RT0508.
GeneIDi2959075.
KEGGirty:RT0508.
PATRICi17910256. VBIRicTyp34752_0534.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE017197 Genomic DNA. Translation: AAU03978.1 .
RefSeqi YP_067460.1. NC_006142.1.

3D structure databases

ProteinModelPortali Q68WL4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257363.RT0508.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAU03978 ; AAU03978 ; RT0508 .
GeneIDi 2959075.
KEGGi rty:RT0508.
PATRICi 17910256. VBIRicTyp34752_0534.

Phylogenomic databases

eggNOGi COG0539.
HOGENOMi HOG000044052.
KOi K02945.
OMAi NINSDER.
OrthoDBi EOG6WT8CC.

Enzyme and pathway databases

BioCyci RTYP257363:GJEQ-533-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 6 hits.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR000110. Ribosomal_S1.
IPR022967. RNA-binding_domain_S1.
[Graphical view ]
Pfami PF00575. S1. 6 hits.
[Graphical view ]
PIRSFi PIRSF002111. RpsA. 1 hit.
PRINTSi PR00681. RIBOSOMALS1.
SMARTi SM00316. S1. 6 hits.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 6 hits.
TIGRFAMsi TIGR00717. rpsA. 1 hit.
PROSITEi PS50126. S1. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiRS1_RICTY
AccessioniPrimary (citable) accession number: Q68WL4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: October 11, 2004
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi