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Protein

30S ribosomal protein S11

Gene

rpsK

Organism
Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-659-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S11UniRule annotation
Gene namesi
Name:rpsKUniRule annotation
Ordered Locus Names:RT0628
OrganismiRickettsia typhi (strain ATCC VR-144 / Wilmington)
Taxonomic identifieri257363 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000000604: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12712730S ribosomal protein S11PRO_0000277893Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.UniRule annotation

Protein-protein interaction databases

STRINGi257363.RT0628.

Structurei

3D structure databases

ProteinModelPortaliQ68WA1.
SMRiQ68WA1. Positions 11-127.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S11P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0100.
HOGENOMiHOG000111597.
KOiK02948.
OMAiNTPYASQ.
OrthoDBiEOG6ZSPF3.

Family and domain databases

Gene3Di3.30.420.80. 1 hit.
HAMAPiMF_01310. Ribosomal_S11.
InterProiIPR001971. Ribosomal_S11.
IPR019981. Ribosomal_S11_bac-type.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERiPTHR11759. PTHR11759. 1 hit.
PfamiPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
TIGRFAMsiTIGR03632. bact_S11. 1 hit.
PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q68WA1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQTIKVKKK KKTITLGVVH IRASFNNTIV TFTDIQGNTI SSASAGGNGF
60 70 80 90 100
KGARKATPYA AQVTIDKASE KAKECGLKTI SIRIGGPGAQ RESAMRALFG
110 120
QNFVVTSILD VSSIAHNGVR PPKRRRV
Length:127
Mass (Da):13,583
Last modified:October 11, 2004 - v1
Checksum:iBED96964C891616C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU04091.1.
RefSeqiYP_067573.1. NC_006142.1.

Genome annotation databases

EnsemblBacteriaiAAU04091; AAU04091; RT0628.
GeneIDi2958700.
KEGGirty:RT0628.
PATRICi17910498. VBIRicTyp34752_0648.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017197 Genomic DNA. Translation: AAU04091.1.
RefSeqiYP_067573.1. NC_006142.1.

3D structure databases

ProteinModelPortaliQ68WA1.
SMRiQ68WA1. Positions 11-127.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257363.RT0628.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAU04091; AAU04091; RT0628.
GeneIDi2958700.
KEGGirty:RT0628.
PATRICi17910498. VBIRicTyp34752_0648.

Phylogenomic databases

eggNOGiCOG0100.
HOGENOMiHOG000111597.
KOiK02948.
OMAiNTPYASQ.
OrthoDBiEOG6ZSPF3.

Enzyme and pathway databases

BioCyciRTYP257363:GJEQ-659-MONOMER.

Family and domain databases

Gene3Di3.30.420.80. 1 hit.
HAMAPiMF_01310. Ribosomal_S11.
InterProiIPR001971. Ribosomal_S11.
IPR019981. Ribosomal_S11_bac-type.
IPR018102. Ribosomal_S11_CS.
[Graphical view]
PANTHERiPTHR11759. PTHR11759. 1 hit.
PfamiPF00411. Ribosomal_S11. 1 hit.
[Graphical view]
PIRSFiPIRSF002131. Ribosomal_S11. 1 hit.
TIGRFAMsiTIGR03632. bact_S11. 1 hit.
PROSITEiPS00054. RIBOSOMAL_S11. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-144 / Wilmington.

Entry informationi

Entry nameiRS11_RICTY
AccessioniPrimary (citable) accession number: Q68WA1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 20, 2007
Last sequence update: October 11, 2004
Last modified: January 7, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia typhi
    Rickettsia typhi (strain Wilmington): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.