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Q68W94 (RL18_RICTY) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L18
Gene names
Name:rplR
Ordered Locus Names:RT0635
OrganismRickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]
Taxonomic identifier257363 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group

Protein attributes

Sequence length118 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01337

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs By similarity.

Sequence similarities

Belongs to the ribosomal protein L18P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11811850S ribosomal protein L18 HAMAP-Rule MF_01337
PRO_0000131333

Sequences

Sequence LengthMass (Da)Tools
Q68W94 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 6597584BC7437F5D

FASTA11813,343
        10         20         30         40         50         60 
MRSAKLKFEK RKSRIRHKIS RTSNRVRLSV FKSGRHIYAQ IIDDSKSITI ASASTLDKTI 

        70         80         90        100        110 
KKIKKSHCNV ENAIKIGREI AKKANSAGIK EVVFDRGGYK YHGIIKALAD AAREKITF 

« Hide

References

[1]"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae."
McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. expand/collapse author list , Hong C., Yu X.-J., Walker D.H., Weinstock G.M.
J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE017197 Genomic DNA. Translation: AAU04098.1.
RefSeqYP_067580.1. NC_006142.1.

3D structure databases

ProteinModelPortalQ68W94.
SMRQ68W94. Positions 22-114.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING257363.RT0635.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAU04098; AAU04098; RT0635.
GeneID2958795.
KEGGrty:RT0635.
PATRIC17910512. VBIRicTyp34752_0655.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0256.
HOGENOMHOG000248742.
KOK02881.
OMAGNKYHGR.
OrthoDBEOG64NB48.
ProtClustDBPRK05593.

Enzyme and pathway databases

BioCycRTYP257363:GJEQ-666-MONOMER.

Family and domain databases

HAMAPMF_01337_B. Ribosomal_L18_B.
InterProIPR005484. Ribosomal_L18/L5.
IPR004389. Ribosomal_L18_bac-type.
[Graphical view]
PfamPF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
TIGRFAMsTIGR00060. L18_bact. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL18_RICTY
AccessionPrimary (citable) accession number: Q68W94
Entry history
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: October 11, 2004
Last modified: February 19, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia typhi

Rickettsia typhi (strain Wilmington): entries and gene names

Ribosomal proteins

Ribosomal proteins families and list of entries