Q68W85 (RL16_RICTY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L16

Gene names

Name:	rplP
Ordered Locus Names:	RT0644

Organism

Rickettsia typhi (strain ATCC VR-144 / Wilmington) [Complete proteome] [HAMAP]

Taxonomic identifier

257363 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › typhus group › Rickettsia typhi

Protein attributes

Sequence length	136 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs By similarity. HAMAP-Rule MF_01342
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L16P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding tRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 136	136	50S ribosomal protein L16 HAMAP-Rule MF_01342		PRO_0000062190

Sequences

	Sequence		Length	Mass (Da)
	Q68W85 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: E637B8226AE761C4	FASTA	136	15,310
	10 20 30 40 50 60 MLAPKKQKFR KAHKGRVMSK AKAGMTLAFG SFGLKSIDGW RVTARQIEAG RKAATRCMKR 70 80 90 100 110 120 QGRLWIRIFP DVPVSKKPAE VRMGKGKGAP EFFAVRVSPG RIMFEIEGVE ENIALRALEL 130 ASAKLPVRTR IVRRYE

References

[1]

"Complete genome sequence of Rickettsia typhi and comparison with sequences of other Rickettsiae." McLeod M.P., Qin X., Karpathy S.E., Gioia J., Highlander S.K., Fox G.E., McNeill T.Z., Jiang H., Muzny D., Jacob L.S., Hawes A.C., Sodergren E., Gill R., Hume J., Morgan M., Fan G., Amin A.G., Gibbs R.A. , Hong C., Yu X.-J., Walker D.H., Weinstock G.M. J. Bacteriol. 186:5842-5855(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC VR-144 / Wilmington.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE017197 Genomic DNA. Translation: AAU04107.1.
RefSeq	YP_067589.1. NC_006142.1.
3D structure databases
ProteinModelPortal	Q68W85.
SMR	Q68W85. Positions 1-134.
ModBase	Search...
Protein-protein interaction databases
STRING	257363.RT0644.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAU04107; AAU04107; RT0644.
GeneID	2958882.
KEGG	rty:RT0644.
PATRIC	17910530. VBIRicTyp34752_0664.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0197.
HOGENOM	HOG000164573.
KO	K02878.
OMA	GAPEYWV.
ProtClustDB	PRK09203.
Enzyme and pathway databases
BioCyc	RTYP257363:GJEQ-675-MONOMER.
Family and domain databases
HAMAP	MF_01342. Ribosomal_L16.
InterPro	IPR016180. Ribosomal_L10e/L16. IPR000114. Ribosomal_L16. IPR020798. Ribosomal_L16_CS. [Graphical view]
PANTHER	PTHR12220. PTHR12220. 1 hit.
Pfam	PF00252. Ribosomal_L16. 1 hit. [Graphical view]
PRINTS	PR00060. RIBOSOMALL16.
SUPFAM	SSF54686. Ribosomal_L10e/L16. 1 hit.
TIGRFAMs	TIGR01164. rplP_bact. 1 hit.
PROSITE	PS00586. RIBOSOMAL_L16_1. 1 hit. PS00701. RIBOSOMAL_L16_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL16_RICTY

Accession

Primary (citable) accession number: Q68W85

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 10, 2006
Last sequence update:	October 11, 2004
Last modified:	May 1, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program