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Q68G74

- LHX8_HUMAN

UniProt

Q68G74 - LHX8_HUMAN

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Protein
LIM/homeobox protein Lhx8
Gene
LHX8
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Transcription factor involved in differentiation of certain neurons and mesenchymal cells By similarity.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi225 – 28460Homeobox
Add
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. female gonad development Source: Ensembl
  2. forebrain neuron development Source: Ensembl
  3. learning or memory Source: Ensembl
  4. odontogenesis of dentin-containing tooth Source: Ensembl
  5. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM/homeobox protein Lhx8
Short name:
LIM homeobox protein 8
Gene namesi
Name:LHX8
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 1

Organism-specific databases

HGNCiHGNC:28838. LHX8.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142671553.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 356356LIM/homeobox protein Lhx8
PRO_0000295810Add
BLAST

Proteomic databases

PaxDbiQ68G74.
PRIDEiQ68G74.

PTM databases

PhosphoSiteiQ68G74.

Expressioni

Gene expression databases

ArrayExpressiQ68G74.
BgeeiQ68G74.
CleanExiHS_LHX8.
GenevestigatoriQ68G74.

Interactioni

Protein-protein interaction databases

BioGridi136112. 1 interaction.
IntActiQ68G74. 1 interaction.
MINTiMINT-8417689.
STRINGi9606.ENSP00000294638.

Structurei

3D structure databases

ProteinModelPortaliQ68G74.
SMRiQ68G74. Positions 75-186, 225-284.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini73 – 13361LIM zinc-binding 1
Add
BLAST
Domaini134 – 19663LIM zinc-binding 2
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Homeobox, LIM domain, Repeat

Phylogenomic databases

eggNOGiNOG264882.
HOGENOMiHOG000038965.
HOVERGENiHBG006261.
InParanoidiQ68G74.
KOiK09375.
OMAiPGKCVCS.
OrthoDBiEOG744T9J.
PhylomeDBiQ68G74.
TreeFamiTF315442.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
2.10.110.10. 2 hits.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q68G74-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MQILSRCQGL MSEECGRTTA LAAGRTRKGA GEEGLVSPEG AGDEDSCSSS    50
APLSPSSSPR SMASGSGCPP GKCVCNSCGL EIVDKYLLKV NDLCWHVRCL 100
SCSVCRTSLG RHTSCYIKDK DIFCKLDYFR RYGTRCSRCG RHIHSTDWVR 150
RAKGNVYHLA CFACFSCKRQ LSTGEEFALV EEKVLCRVHY DCMLDNLKRE 200
VENGNGISVE GALLTEQDVN HPKPAKRART SFTADQLQVM QAQFAQDNNP 250
DAQTLQKLAE RTGLSRRVIQ VWFQNCRARH KKHVSPNHSS STPVTAVPPS 300
RLSPPMLEEM AYSAYVPQDG TMLTALHSYM DAHSPTTLGL QPLLPHSMTQ 350
LPISHT 356
Length:356
Mass (Da):39,301
Last modified:May 18, 2010 - v2
Checksum:i9BA025D3ECADCD56
GO
Isoform 2 (identifier: Q68G74-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-10: Missing.

Note: Gene prediction based on EST data.

Show »
Length:346
Mass (Da):38,170
Checksum:i989F0E991481A24F
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 1010Missing in isoform 2.
VSP_047378

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti297 – 2971V → A in AAH40321. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC099786 Genomic DNA. No translation available.
BC040321 mRNA. Translation: AAH40321.1.
CCDSiCCDS30756.1. [Q68G74-1]
CCDS58008.1. [Q68G74-2]
RefSeqiNP_001001933.1. NM_001001933.1. [Q68G74-1]
NP_001243043.1. NM_001256114.1. [Q68G74-2]
UniGeneiHs.403934.

Genome annotation databases

EnsembliENST00000294638; ENSP00000294638; ENSG00000162624. [Q68G74-1]
ENST00000356261; ENSP00000348597; ENSG00000162624. [Q68G74-2]
GeneIDi431707.
KEGGihsa:431707.
UCSCiuc001dgo.3. human. [Q68G74-1]

Polymorphism databases

DMDMi296434566.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC099786 Genomic DNA. No translation available.
BC040321 mRNA. Translation: AAH40321.1 .
CCDSi CCDS30756.1. [Q68G74-1 ]
CCDS58008.1. [Q68G74-2 ]
RefSeqi NP_001001933.1. NM_001001933.1. [Q68G74-1 ]
NP_001243043.1. NM_001256114.1. [Q68G74-2 ]
UniGenei Hs.403934.

3D structure databases

ProteinModelPortali Q68G74.
SMRi Q68G74. Positions 75-186, 225-284.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 136112. 1 interaction.
IntActi Q68G74. 1 interaction.
MINTi MINT-8417689.
STRINGi 9606.ENSP00000294638.

PTM databases

PhosphoSitei Q68G74.

Polymorphism databases

DMDMi 296434566.

Proteomic databases

PaxDbi Q68G74.
PRIDEi Q68G74.

Protocols and materials databases

DNASUi 431707.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000294638 ; ENSP00000294638 ; ENSG00000162624 . [Q68G74-1 ]
ENST00000356261 ; ENSP00000348597 ; ENSG00000162624 . [Q68G74-2 ]
GeneIDi 431707.
KEGGi hsa:431707.
UCSCi uc001dgo.3. human. [Q68G74-1 ]

Organism-specific databases

CTDi 431707.
GeneCardsi GC01P075594.
HGNCi HGNC:28838. LHX8.
MIMi 604425. gene.
neXtProti NX_Q68G74.
PharmGKBi PA142671553.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG264882.
HOGENOMi HOG000038965.
HOVERGENi HBG006261.
InParanoidi Q68G74.
KOi K09375.
OMAi PGKCVCS.
OrthoDBi EOG744T9J.
PhylomeDBi Q68G74.
TreeFami TF315442.

Miscellaneous databases

GenomeRNAii 431707.
NextBioi 108706.
PROi Q68G74.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q68G74.
Bgeei Q68G74.
CleanExi HS_LHX8.
Genevestigatori Q68G74.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
2.10.110.10. 2 hits.
InterProi IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR001781. Znf_LIM.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
[Graphical view ]
SMARTi SM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Testis.

Entry informationi

Entry nameiLHX8_HUMAN
AccessioniPrimary (citable) accession number: Q68G74
Secondary accession number(s): E9PGE3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: May 18, 2010
Last modified: July 9, 2014
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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