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Unreviewed, UniProtKB/TrEMBL Q68G41 (Q68G41_RAT)

Last modified February 9, 2010. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) EMBL AAH78705.1
Submitted name:
    Dodecenoyl-coenzyme A delta isomerase EMBL EDM03825.1
Gene names
Name: Dci RGD 61892
ORF Names: rCG_33892 EMBL EDM03825.1
OrganismRattus norvegicus (Rat) EMBL AAH78705.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

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Protein attributes

Sequence length289 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Sequence similarities

Belongs to the enoyl-CoA hydratase/isomerase family.

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Ontologies

Keywords
   Molecular functionIsomerase EMBL AAH78705.1
Gene Ontology (GO)
   Biological processfatty acid beta-oxidation

Traceable author statement. Source: RGD

   Cellular componentmitochondrial inner membrane

Inferred from electronic annotation. Source: Compara

   Molecular functiondodecenoyl-CoA delta-isomerase activity

Inferred from direct assay. Source: RGD

identical protein binding

Inferred from direct assay. Source: RGD

Complete GO annotation...

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Sequences

Sequence LengthMass (Da)Tools
Q68G41-1 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 79D2CD1F9CC7FF16

FASTA28932,264
        10         20         30         40         50         60 
MALAAARRVL LQAGSRLGRR GAVDGARRFS NKRVLVEKEG EAGIAVMKFK NPPVNSLSLE 

        70         80         90        100        110        120 
FLTEFVISLE KLENDKSIRG VILTSERPGI FSAGLDLMEM YGRNPAHYAE YWKAVQELWL 

       130        140        150        160        170        180 
RLYLSNLTLI SAINGASPAG GCLMALTCDY RIMADNPKYT IGLNESLLGI VAPFWLKDNY 

       190        200        210        220        230        240 
VNTIGHRAAE RALQLGTLFP PAEALKVGLV DEVVPEDQVH SKARSVMAKW FTIPDHSRQL 

       250        260        270        280 
TKSMMRKATA DNLIKQREAD IQNFTSFISR DSIQKSLHVY LEKLKQKKG

« Hide

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References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Kidney EMBL AAH78705.1.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed: 15632090] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM03825.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM03825.1.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC078705 mRNA. Translation: AAH78705.1.
CH473948 Genomic DNA. Translation: EDM03825.1.
IPIIPI00882405.
RefSeqNP_059002.2.
UniGeneRn.80835

3D structure databases

SMRQ68G41. Positions 29-285.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ68G41.

Genome annotation databases

EnsemblENSRNOT00000011784; ENSRNOP00000011784; ENSRNOG00000008843; Rattus norvegicus. [Genome view]
GeneID29740.
KEGGrno:29740.

Organism-specific databases

CTD29740.

Phylogenomic databases

HOVERGENQ68G41.
InParanoidQ68G41.
OMAFKNPPVN.
OrthoDBEOG986C02.
PhylomeDBQ68G41.

Gene expression databases

ArrayExpressQ68G41.
GenevestigatorQ68G41.

Family and domain databases

InterProIPR001753. Crotonase_core.
IPR018376. Enoyl-CoA_hyd/isom_CS.
[Graphical view]
PfamPF00378. ECH. 1 hit.
[Graphical view]
PROSITEPS00166. ENOYL_COA_HYDRATASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio610244.

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Entry information

Entry nameQ68G41_RAT
AccessionPrimary (citable) accession number: Q68G41
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: February 9, 2010
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information