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Protein

Auxin transporter-like protein 2

Gene

Os05g0447200

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processAmino-acid transport, Auxin signaling pathway, Symport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin transporter-like protein 2
Gene namesi
Ordered Locus Names:Os05g0447200, LOC_Os05g37470
ORF Names:OSJNBb0012G21.5
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 5

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 58CytoplasmicSequence analysisAdd BLAST58
Transmembranei59 – 76HelicalSequence analysisAdd BLAST18
Topological domaini77 – 78ExtracellularSequence analysis2
Transmembranei79 – 99HelicalSequence analysisAdd BLAST21
Topological domaini100 – 134CytoplasmicSequence analysisAdd BLAST35
Transmembranei135 – 155HelicalSequence analysisAdd BLAST21
Topological domaini156 – 171ExtracellularSequence analysisAdd BLAST16
Transmembranei172 – 192HelicalSequence analysisAdd BLAST21
Topological domaini193CytoplasmicSequence analysis1
Transmembranei194 – 214HelicalSequence analysisAdd BLAST21
Topological domaini215 – 231ExtracellularSequence analysisAdd BLAST17
Transmembranei232 – 252HelicalSequence analysisAdd BLAST21
Topological domaini253 – 265CytoplasmicSequence analysisAdd BLAST13
Transmembranei266 – 286HelicalSequence analysisAdd BLAST21
Topological domaini287 – 313ExtracellularSequence analysisAdd BLAST27
Transmembranei314 – 334HelicalSequence analysisAdd BLAST21
Topological domaini335 – 355CytoplasmicSequence analysisAdd BLAST21
Transmembranei356 – 376HelicalSequence analysisAdd BLAST21
Topological domaini377ExtracellularSequence analysis1
Transmembranei378 – 398HelicalSequence analysisAdd BLAST21
Topological domaini399 – 423CytoplasmicSequence analysisAdd BLAST25
Transmembranei424 – 444HelicalSequence analysisAdd BLAST21
Topological domaini445 – 482ExtracellularSequence analysisAdd BLAST38

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000938511 – 482Auxin transporter-like protein 2Add BLAST482

Proteomic databases

PaxDbiQ688J2.

Expressioni

Gene expression databases

ExpressionAtlasiQ688J2. baseline and differential.
GenevisibleiQ688J2. OS.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g37470.1.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1303. Eukaryota.
COG0814. LUCA.
HOGENOMiHOG000238482.
InParanoidiQ688J2.
KOiK13946.
OMAiEKAVGMH.

Family and domain databases

InterProiView protein in InterPro
IPR013057. AA_transpt_TM.
PfamiView protein in Pfam
PF01490. Aa_trans. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q688J2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVPAGDQAEE AIVADAGKEE AEVRAAMGVE QDGKFSMTSL LWHGGSVWDA
60 70 80 90 100
WFSCASNQVA QVLLTLPYSF SQLGMLSGLL LQVFYGLMGS WTAYLISVLY
110 120 130 140 150
VEYRARKEKE GVSFKNHVIQ WFEVLDGLLG PYWKAAGLAF NCTFLLFGSV
160 170 180 190 200
IQLIACASNI YYINDRLDKR TWTYIFGACC STTVFIPSFH NYRIWSFLGL
210 220 230 240 250
GMTTYTAWYL AIAAAVHGQV DGVTHSGPSK MVLYFTGATN ILYTFGGHAV
260 270 280 290 300
TVEIMHAMWK PQKFKYIYLV ATLYVFTLTL PSASAMYWAF GDALLTHSNA
310 320 330 340 350
FSLLPRSGWR DAAVILMLIH QFITFGFACT PLYFVWEKAI GMHGTRSVLT
360 370 380 390 400
RALARLPIVV PIWFLAIIFP FFGPINSAVG ALLVSFTVYI IPSLSHILTY
410 420 430 440 450
RSASARLNAA EKPPPFLPSW SGMFVVNVFV VAWVLVVGFG LGGWASVTNF
460 470 480
IKQIDTFGLF AKCYQCPPRA HAGAPLPAPP RH
Length:482
Mass (Da):53,358
Last modified:October 11, 2004 - v1
Checksum:iFAE0DBD64A686F79
GO
Isoform 2 (identifier: Q688J2-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     59-59: V → VRPTTNDLVMPLAHISFGILQV

Note: May be due to intron retention. No experimental confirmation available.
Show »
Length:503
Mass (Da):55,663
Checksum:iB8782DCA50B58B4B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti446S → G in AK111849 (PubMed:12869764).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_01701259V → VRPTTNDLVMPLAHISFGIL QV in isoform 2. 1 Publication1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC135421 Genomic DNA. Translation: AAU10758.1.
AP008211 Genomic DNA. Translation: BAF17607.1.
AP014961 Genomic DNA. Translation: BAS94291.1.
AP014961 Genomic DNA. Translation: BAS94292.1.
AK111659 mRNA. No translation available.
AK111849 mRNA. No translation available.
RefSeqiXP_015637481.1. XM_015781995.1. [Q688J2-2]
XP_015637482.1. XM_015781996.1. [Q688J2-1]
UniGeneiOs.9339.

Genome annotation databases

EnsemblPlantsiOS05T0447200-01; OS05T0447200-01; OS05G0447200. [Q688J2-2]
OS05T0447200-02; OS05T0447200-02; OS05G0447200. [Q688J2-1]
GeneIDi4338948.
GrameneiOS05T0447200-01; OS05T0447200-01; OS05G0447200.
OS05T0447200-02; OS05T0447200-02; OS05G0447200.
KEGGiosa:4338948.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiLAX2_ORYSJ
AccessioniPrimary (citable) accession number: Q688J2
Secondary accession number(s): Q0DHR6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: October 11, 2004
Last modified: August 30, 2017
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families