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Q683N8 (Q683N8_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 71. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:Ahr RGD 2074
Synonyms:ahR EMBL CAH25391.1
OrganismRattus norvegicus (Rat) EMBL CAH25391.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length844 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 basic helix-loop-helix (bHLH) domain. RuleBase RU000367

Contains bHLH (basic helix-loop-helix) domain. SAAS SAAS000014

Ontologies

Keywords
   Biological processTranscription
Transcription regulation SAAS SAAS000014
   Cellular componentNucleus SAAS SAAS000014
   Molecular functionReceptor EMBL CAH25391.1
Gene Ontology (GO)
   Biological_processregulation of transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

transcription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

signal transducer activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL CAH25391.1

Sequences

Sequence LengthMass (Da)Tools
Q683N8 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 29CF96AD950FB5A7

FASTA84495,302
        10         20         30         40         50         60 
ASRKRRKPVQ KTVKPVPAEG IKSNPSKRHR DRLNTELDRL ASLLPFPQDV INKLDKLSVL 

        70         80         90        100        110        120 
RLSVSYLRAK SFFDVALKST PADRSRGQDQ CRAQVRDWQD LQEGEFLLQA LNGFVLVVTA 

       130        140        150        160        170        180 
DALVFYASST IQDYLGFQQS DVIHQSVYEL IHTEDRAEFQ RQLHWALNPS QCTDSAQGVD 

       190        200        210        220        230        240 
ETHGLPQPAV YYTPDQLPPE NTAFMERCFR CRLRCLLDNS SGFLAMNFQG RLKYLHGQNK 

       250        260        270        280        290        300 
KGKDGALLPP QLALFAIATP LQPPSILEIR TKNFIFRTKH KLDFTPIGCD AKGQLILGYT 

       310        320        330        340        350        360 
EVELCNKGSG YQFIHAADML HCAESHIRMI KTGESGMTVF RLLAKHSRWR WVQSNARLIY 

       370        380        390        400        410        420 
RNGRPDYIIA TQRPLTDEEG REHLQKRSMT LPFMFATGEA VLYEISSPFS PIMDPLPIRT 

       430        440        450        460        470        480 
KSNTSRKDWA PQSTPSKDSF HPNSLMSALI QQDESIYLCP PSSPAPLDSH FLMDSMSECG 

       490        500        510        520        530        540 
SWQGSFAVAS NEALLKHEEI RHTQDVNLTL SGGPSELFPD NKNNDLYSIM RNLGIDFEDI 

       550        560        570        580        590        600 
RSMQNEEFFR TDSSGEVDFK DIDITDEILT YVQDSLNNST LLNSACQQQP VSQHLSCMLQ 

       610        620        630        640        650        660 
ERLQLEQQQQ LQQQHPTQTL EPQRQLCQVE VPQHELGQKT KHMQVNGMFA SWNPAPPVSF 

       670        680        690        700        710        720 
SCPQQERKHY SLFSGLQGTA QEFPYKSEVD SMPYTQNFAP CNQSLLPEHS KGTQLDFPGR 

       730        740        750        760        770        780 
DFERSLHPNA SNLEDFVSCL QVPENQRHGI NSQSAMVSPQ AYYAGAMSMY QCQAGPQHTP 

       790        800        810        820        830        840 
VDQMQYSPEI PGSQAFLSKF QSPSILNEAY SADLSSIGHL QTAAHLPRLA EAQPLPDITP 


SGFL 

« Hide

References

[1]"Risk Assessment of dietary dioxins."
Fan M., Bell D.R.
Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Crl: EMBL CAH25391.1.
Tissue: Liver EMBL CAH25391.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AJ821851 mRNA. Translation: CAH25391.1.
UniGeneRn.91370.

3D structure databases

ProteinModelPortalQ683N8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000006618.

Chemistry

BindingDBQ683N8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

RGD2074. Ahr.

Phylogenomic databases

HOVERGENHBG007313.
InParanoidQ683N8.

Gene expression databases

GenevestigatorQ683N8.

Family and domain databases

Gene3D4.10.280.10. 1 hit.
InterProIPR011598. bHLH_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR013767. PAS_fold.
IPR013655. PAS_fold_3.
[Graphical view]
PfamPF00010. HLH. 1 hit.
PF00989. PAS. 1 hit.
PF08447. PAS_3. 1 hit.
[Graphical view]
SMARTSM00353. HLH. 1 hit.
SM00086. PAC. 1 hit.
SM00091. PAS. 2 hits.
[Graphical view]
SUPFAMSSF47459. SSF47459. 1 hit.
SSF55785. SSF55785. 2 hits.
PROSITEPS50888. BHLH. 1 hit.
PS50112. PAS. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ683N8_RAT
AccessionPrimary (citable) accession number: Q683N8
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2004
Last sequence update: October 11, 2004
Last modified: July 9, 2014
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)